FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_VIBCH (Chaperone protein dnaK OS=Vibrio cholerae GN=dnaK PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 4.159e-66
Identity = 130/238 (54.62%), Postives = 171/238 (71.85%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK+    G++ + ++DLGGGTFD+S++ I+    E  FEV +T GDTHLGGEDFDNRM+N+ V EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSVIAYTDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKQG---GDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINYLVDEFKKDQGIDLRNDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_VIBC3 (Chaperone protein dnaK OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.159e-66
Identity = 130/238 (54.62%), Postives = 171/238 (71.85%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK+    G++ + ++DLGGGTFD+S++ I+    E  FEV +T GDTHLGGEDFDNRM+N+ V EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSVIAYTDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKQG---GDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINYLVDEFKKDQGIDLRNDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHEPW (Chaperone protein dnaK OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dnaK PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.159e-66
Identity = 133/238 (55.88%), Postives = 168/238 (70.59%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T  E L+G  AK Q   NPTNTVF  KRLIGRRF D  VQ D+ + PFK+I   AD     V  +G  K+ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+   EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTADETLVGQPAKRQAVTNPTNTVFAIKRLIGRRFKDDEVQRDVDIMPFKIIG--ADNGDAWVEAQG--KKMAPPQISAEILKKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDSVDGEQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQSLDLRNDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_VIBPR (Chaperone protein dnaK OS=Vibrio proteolyticus GN=dnaK PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.094e-66
Identity = 129/238 (54.20%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTT S + +TD E L+G  AK Q   NPTNT+F  KRLIGRRF D  VQ D+++ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+ V EFK+++  D+  +P A++R++ A
Sbjct:   34 RTTASVIAYTDGETLVGQPAKRQAVTNPTNTLFAIKRLIGRRFEDEEVQRDIEIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEEVTGAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKKG---GDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLATNGDTHLGGEDFDNRLINYLVDEFKKEQGIDLKTDPLAMQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_ROSDO (Chaperone protein dnaK OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dnaK PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.265e-66
Identity = 131/234 (55.98%), Postives = 168/234 (71.79%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD ERL+G  AK Q   NP NT+F  KRLIGRR  DA++  D K  PF VI G        V  KGE+  ++  +IS+ +L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK+ T    + + ++DLGGGTFDV++L I++G+FEVK+T GDT LGGEDFD R+VN+    FK++   D++ +  AL+RL+ A
Sbjct:   34 RTTPSIVAFTDDERLVGQPAKRQAVTNPDNTIFGVKRLIGRRNDDAALAKDKKNLPFAVIDGGNGDAW--VEAKGEK--YSPSQISAFILGKMKETAESYLGEDVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKEQT----QTIAVYDLGGGTFDVTILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADTFKKEHSVDLTQDKMALQRLKEA 259          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_GRABC (Chaperone protein dnaK OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.265e-66
Identity = 131/235 (55.74%), Postives = 171/235 (72.77%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + FTD+ ERL+G AAK Q   NP+NT++  KRLIGRR+ D +V  D  L P+ ++ G  D     V  +GE+  +A  +IS+ VL KM+E AEAYLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V+RIINEPTAAA+AYG+DKK T      + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R++++   EF+R++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSMIAFTDSGERLVGQAAKRQAVTNPSNTLYAVKRLIGRRYDDPTVAKDKDLVPYAIVRG--DNGDAWVEARGEK--YAPSQISAFVLSKMKETAEAYLGEPVTQAVITVPAYFNDSQRQATKDAGRIAGLEVLRIINEPTAAALAYGMDKKNTG----TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDARVIDYLASEFQREQGIDLRKDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_GEOUR (Chaperone protein dnaK OS=Geobacter uraniireducens (strain Rf4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.265e-66
Identity = 131/235 (55.74%), Postives = 173/235 (73.62%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V  TD+ ERL+G  AK Q   NP NT+F  KRLIGR+F   +V+ D+ + PFK++   AD     V  +G++  ++A EIS+MVL KM++ AE YLG T+ +AV+TVPAYF+DSQRQATKDAG IAGLNV+RIINEPTAAA+AYGLDKK     ++ + +FDLGGGTFD+S+L + EG+FEVK+T GDT LGGEDFD  +++    EFK+ +  D+ G+  AL+RL+ A
Sbjct:   34 RTTPSMVAITDSGERLVGQQAKRQAVTNPENTLFAIKRLIGRKFDSEAVKKDIAISPFKIVK--ADNGDAWVEVRGQK--YSAPEISAMVLQKMKKTAEDYLGETVTDAVITVPAYFDDSQRQATKDAGKIAGLNVLRIINEPTAAALAYGLDKKK----DEKIAVFDLGGGTFDISILELGEGVFEVKSTNGDTFLGGEDFDQDIIDWIAAEFKKDQGIDLRGDKMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_GEOBB (Chaperone protein dnaK OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=dnaK PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.210e-65
Identity = 128/235 (54.47%), Postives = 173/235 (73.62%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + F ++ ERL+G  AK Q   NP NT++  KRLIGR+F   +V+ D+ + PFK++   AD     V  +G++  ++  EIS+MVL KM++ AE YLG  + +AV+TVPAYF+DSQRQATKDAG IAGLNV+RIINEPTAAA+AYGLDKK     ++ + +FDLGGGTFDVS+L + EG+FEVK+T GDT LGGEDFD ++++H   EFK+ +  D+ G+  AL+RL+ A
Sbjct:   34 RTTPSMIAFAESGERLVGQQAKRQAVTNPENTLYAIKRLIGRKFETEAVKKDIAISPFKIVK--ADNSDAWVEVRGQK--YSPPEISAMVLQKMKKTAEDYLGEAVTDAVITVPAYFDDSQRQATKDAGKIAGLNVLRIINEPTAAALAYGLDKKK----DEKIAVFDLGGGTFDVSILELGEGVFEVKSTNGDTFLGGEDFDQKIIDHIADEFKKDQGIDLRGDKMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_DESAA (Chaperone protein dnaK OS=Desulfatibacillum alkenivorans (strain AK-01) GN=dnaK PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.210e-65
Identity = 127/235 (54.04%), Postives = 172/235 (73.19%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS VG + + ERL+G  AK Q   NP NTVF  KRLIGR+F+   V+ DM + P++++ G      I +    + K+++ +EISS +L  +++ AE YLG T+ +AV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAA++AYGLDKK+    ++ + +FDLGGGTFDVS+L I EG+FEVK+T GDTHLGGEDFD  ++++   EFK+ +  D+  +  AL+RL+ A
Sbjct:   34 RTTPSIVGISSSGERLVGQIAKRQAITNPQNTVFAVKRLIGRKFASQQVKDDMNVLPYQIVDGDNGDAYIEL----QGKKYSPQEISSFILAYIKKAAEEYLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVLRIINEPTAASLAYGLDKKS----DEKIAVFDLGGGTFDVSILEIGEGVFEVKSTNGDTHLGGEDFDLLVIDYLADEFKKDQGIDLRSDKMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_AKKM8 (Chaperone protein dnaK OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=dnaK PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.210e-65
Identity = 128/233 (54.94%), Postives = 173/233 (74.25%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            RTTPS V FT + ERL+G AAK Q   NP NTVF +KRLIGR++S+ + + D K+ P++++  P     I V+  GE+K F+ +EI+SMVL K++  AE+ LG TI  AV+TVPAYFND+QR ATK AG IAGL V RIINEPTAAA+AYGLDKK+     +N+ ++DLGGGTFD+S+L I +G+FEVKA+ GDTHLGG+D+DN ++N  + EFK+    D+S  P A++R++
Sbjct:   34 RTTPSIVAFTKSGERLVGQAAKRQAVTNPKNTVFSSKRLIGRKYSELTEE-DKKV-PYEIVEAPNGDAYIRVDVGGEKKTFSPQEIASMVLAKLKADAESKLGETITEAVITVPAYFNDAQRNATKAAGEIAGLKVRRIINEPTAAALAYGLDKKS----NENIAVYDLGGGTFDISVLEIGDGVFEVKASDGDTHLGGDDWDNAIINWIIGEFKKDSGMDLSNQPDAIQRIK 260          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_VIBCH4.159e-6654.62Chaperone protein dnaK OS=Vibrio cholerae GN=dnaK ... [more]
DNAK_VIBC34.159e-6654.62Chaperone protein dnaK OS=Vibrio cholerae serotype... [more]
DNAK_SHEPW4.159e-6655.88Chaperone protein dnaK OS=Shewanella piezotolerans... [more]
DNAK_VIBPR7.094e-6654.20Chaperone protein dnaK OS=Vibrio proteolyticus GN=... [more]
DNAK_ROSDO9.265e-6655.98Chaperone protein dnaK OS=Roseobacter denitrifican... [more]
DNAK_GRABC9.265e-6655.74Chaperone protein dnaK OS=Granulibacter bethesdens... [more]
DNAK_GEOUR9.265e-6655.74Chaperone protein dnaK OS=Geobacter uraniireducens... [more]
DNAK_GEOBB1.210e-6554.47Chaperone protein dnaK OS=Geobacter bemidjiensis (... [more]
DNAK_DESAA1.210e-6554.04Chaperone protein dnaK OS=Desulfatibacillum alkeni... [more]
DNAK_AKKM81.210e-6554.94Chaperone protein dnaK OS=Akkermansia muciniphila ... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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