FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHELP (Chaperone protein dnaK OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 127/238 (53.36%), Postives = 165/238 (69.33%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T  E L+G  AK Q   NP NT F  KRLIGRRF D  VQ D+ + PFK+IA       +    +  +K+ A  ++S+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+   EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTGEEVLVGQPAKRQAVTNPKNTFFAIKRLIGRRFKDDEVQRDVDIMPFKIIAADNGDAWV----EAHDKKMAPPQVSAEILKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDSVDGEQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQSLDLRNDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSF (Chaperone protein dnaK OS=Geobacter sp. (strain FRC-32) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 129/235 (54.89%), Postives = 171/235 (72.77%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V  TD+ ERL+G  AK Q   NP NT+F  KRLIGR+F   +V+ D+ + PFK++   AD     V  +G++  ++  EIS+MVL KM++ AE YLG T+ +AV+TVPAYF+DSQRQATKDAG IAGLNV+RIINEPTAAA+AYGLDKK     ++ + +FDLGGGTFD+S+L + EG+FEVK+T GDT LGGEDFD  +++    EFK+ +  D+  +  AL+RL+ A
Sbjct:   34 RTTPSMVAITDSGERLVGQQAKRQAVTNPENTLFAIKRLIGRKFESEAVKKDIAISPFKIVK--ADNADAWVEVRGQK--YSPPEISAMVLQKMKKTAEDYLGETVTDAVITVPAYFDDSQRQATKDAGKIAGLNVLRIINEPTAAALAYGLDKKK----DEKIAVFDLGGGTFDISILELGEGVFEVKSTNGDTFLGGEDFDQNVIDWIADEFKKDQGIDLRNDKMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_AGRVS (Chaperone protein dnaK OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaK PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 129/235 (54.89%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F+D  ERL+G  AK Q   NPTNT+F  KRLIGRR+ D +V+ D  L PF +I G      +    KG    ++  +IS+M+L KM+E AEAYLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK       K + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +   EFK+++  ++  +  AL+RL+ A
Sbjct:   34 RTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKGLVPFPIIKGDNGDAWVEAQGKG----YSPAQISAMILQKMKETAEAYLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALAYGLDK----TEGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLAAEFKKEQGIELKNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK2_VIBF1 (Chaperone protein dnaK 2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 128/238 (53.78%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTT S + +TD E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+++ PFK++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AVVTVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+ V EF++++  ++  +P A++R++ A
Sbjct:   34 RTTASVIAYTDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFEDEEVQRDIEIMPFKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEEVTGAVVTVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKG---GDRTIAVYDLGGGTFDISIIEIDNVDGEQTFEVLATNGDTHLGGEDFDNRLINYLVSEFEKEQGINLKNDPLAMQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SINMW (Chaperone protein dnaK OS=Sinorhizobium medicae (strain WSM419) GN=dnaK PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.843e-65
Identity = 126/235 (53.62%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT D ERL+G  AK Q   NP NT+F  KRLIGR F D + Q D  + P+K++        +    +  +K ++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL+V+RIINEPTAAA+AYGLDKK      K + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +   EFK+++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSMVAFTEDGERLVGQPAKRQAVTNPENTLFAIKRLIGRTFEDPTTQKDKGMVPYKIVKADNGDAWV----EAHDKSYSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLDVLRIINEPTAAALAYGLDKKE----GKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLASEFKKEQGIDLKNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHISS (Chaperone protein dnaK OS=Shigella sonnei (strain Ss046) GN=dnaK PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.843e-65
Identity = 132/239 (55.23%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHIFL (Chaperone protein dnaK OS=Shigella flexneri GN=dnaK PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.843e-65
Identity = 132/239 (55.23%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHIF8 (Chaperone protein dnaK OS=Shigella flexneri serotype 5b (strain 8401) GN=dnaK PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.843e-65
Identity = 132/239 (55.23%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHIDS (Chaperone protein dnaK OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaK PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.843e-65
Identity = 132/239 (55.23%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHIBS (Chaperone protein dnaK OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaK PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.843e-65
Identity = 132/239 (55.23%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + PFK+IA  AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK     G + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIA--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK---GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 265          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SHELP6.005e-6553.36Chaperone protein dnaK OS=Shewanella loihica (stra... [more]
DNAK_GEOSF6.005e-6554.89Chaperone protein dnaK OS=Geobacter sp. (strain FR... [more]
DNAK_AGRVS6.005e-6554.89Chaperone protein dnaK OS=Agrobacterium vitis (str... [more]
DNAK2_VIBF16.005e-6553.78Chaperone protein dnaK 2 OS=Vibrio fischeri (strai... [more]
DNAK_SINMW7.843e-6553.62Chaperone protein dnaK OS=Sinorhizobium medicae (s... [more]
DNAK_SHISS7.843e-6555.23Chaperone protein dnaK OS=Shigella sonnei (strain ... [more]
DNAK_SHIFL7.843e-6555.23Chaperone protein dnaK OS=Shigella flexneri GN=dna... [more]
DNAK_SHIF87.843e-6555.23Chaperone protein dnaK OS=Shigella flexneri seroty... [more]
DNAK_SHIDS7.843e-6555.23Chaperone protein dnaK OS=Shigella dysenteriae ser... [more]
DNAK_SHIBS7.843e-6555.23Chaperone protein dnaK OS=Shigella boydii serotype... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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