FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_ACICJ (Chaperone protein dnaK OS=Acidiphilium cryptum (strain JF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.282e-64
Identity = 126/235 (53.62%), Postives = 171/235 (72.77%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F+++ ERL+G +AK Q   NPTNT++  KRLIGRR+ D +V+ D  L  + ++ G  D     V  +G+  ++A  +ISS VL KM+E AEAYLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYG+DKK        + ++DLGGGTFD+S+L + +G+FEVK+T GDT LGGEDFD R++++  +EFKR++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSMVAFSESNERLVGQSAKRQAVTNPTNTLYAVKRLIGRRYDDPTVEKDKGLVSYNIVRG--DNGDAWVESRGQ--RYAPSQISSFVLTKMKETAEAYLGEAVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGMDKKQGG----TIAVYDLGGGTFDISILELGDGVFEVKSTNGDTFLGGEDFDQRVIDYLAEEFKREQGIDLRKDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SHESH (Chaperone protein dnaK OS=Shewanella sediminis (strain HAW-EB3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.980e-64
Identity = 130/238 (54.62%), Postives = 165/238 (69.33%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T  E L+G  AK Q   NPTNT F  KRLIGRRF D  VQ D+ + PFK+I   AD     V   G  K+ A  ++S+  L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYG+DKK    G+  V ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+   EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTGEEILVGQPAKRQAVTNPTNTFFAIKRLIGRRFKDDEVQRDVDIMPFKIIG--ADNGDAWVEAHG--KKMAPPQVSAETLKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGIDKKQ---GDNIVAVYDLGGGTFDISIIEIDSVDGEQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQSLDLRNDPLAMQRLKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEHT (Chaperone protein dnaK OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dnaK PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.980e-64
Identity = 133/239 (55.65%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NPTNTVF  KRLIGRRF D  VQ D+ + PFK++   AD     V   GE++  AA +IS+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYG+DK     GE  V ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+ V EFK+ +  D+  +P A++R++ A
Sbjct:   34 RTTPSVIAYTQDGETLVGQPAKRQAVTNPTNTVFAIKRLIGRRFEDEEVQRDIGIMPFKIVK--ADNGDAWVEAGGEKR--AAPQISAEILKKMKKTAEDFLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGMDKNR---GENIVAVYDLGGGTFDLSIIEIDEVEGEHTFEVLATNGDTHLGGEDFDNRVINYLVAEFKKDQGLDLKTDPLAMQRVKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_METS4 (Chaperone protein dnaK OS=Methylobacterium sp. (strain 4-46) GN=dnaK PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.980e-64
Identity = 131/236 (55.51%), Postives = 167/236 (70.76%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVI-AGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD  ERL+G  AK Q   NP+ T F  KRLIGR + D   Q D  L P+ ++ AG  D  +     + + KQF+  +IS+  L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK + V    + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFKR++  D++ +  AL+RL+ A
Sbjct:   34 RTTPSIVAFTDEGERLVGQPAKRQAVTNPSRTFFAIKRLIGRTYDDPMTQKDKGLVPYHIVRAGNGDAWV-----EADGKQFSPSQISAFTLQKMKETAESYLGQPVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKKSGV----IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRIVEYLAAEFKREQGIDLTRDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_HAEDU (Chaperone protein dnaK OS=Haemophilus ducreyi GN=dnaK PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.980e-64
Identity = 127/238 (53.36%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF+D  VQ D+++ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLD K  +   + + ++DLGGGTFD+S++ I+    E  FEV+AT GDTHLGGEDFDNR++N+ V+EF++++  D+  +P A++R++ A
Sbjct:   34 RTTPSIIAYTDKETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDNEVQRDIEIMPFEI--AKADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDSKKEN---QIIAVYDLGGGTFDISIIEIDNFDGEQTFEVRATNGDTHLGGEDFDNRVINYLVEEFQKEQGVDLRNDPMAMQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_ENT38 (Chaperone protein dnaK OS=Enterobacter sp. (strain 638) GN=dnaK PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.980e-64
Identity = 131/239 (54.81%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D  + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK+   VG + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+RM+N+ V EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDEAIMPYKIIG--ADNGDAWIDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKE---VGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRMINYLVDEFKKDQGIDLRNDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_CAUCR (Chaperone protein dnaK OS=Caulobacter crescentus GN=dnaK PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.892e-64
Identity = 128/233 (54.94%), Postives = 165/233 (70.82%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            RTTPS V F  D ERLIG  AK Q   NPTNT+F  KRLIGR  SD  V+ D  + P++++ GP     +    K   K ++ +E+S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK       K + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V++   EFK+++  D+  +  AL+RLR
Sbjct:   34 RTTPSVVAFLEDGERLIGQPAKRQAVTNPTNTLFAIKRLIGRTASDPVVEKDKGMVPYEIVKGPTGDAWV----KAHGKDYSPQEVSAFILQKMKEAAEAHLGEPVTKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKN----DGKKIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDLRIVDYLADEFKKEQGVDLRKDKLALQRLR 258          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SERP5 (Chaperone protein dnaK OS=Serratia proteamaculans (strain 568) GN=dnaK PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.084e-64
Identity = 130/239 (54.39%), Postives = 170/239 (71.13%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D   Q D  + P+K++A  AD     V  KG+  + A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK+   VG + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD+R++N+ V+EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTQDGEILVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEAQRDKDIMPYKIVA--ADNGDAWVEVKGQ--RVAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKE---VGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKEQGFDLRNDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SALTY (Chaperone protein dnaK OS=Salmonella typhimurium GN=dnaK PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.084e-64
Identity = 130/239 (54.39%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK+   VG + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD R++N+ V EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKE---VGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQGIDLRNDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_SALTI (Chaperone protein dnaK OS=Salmonella typhi GN=dnaK PE=2 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 5.084e-64
Identity = 130/239 (54.39%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDK+   VG + + ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFD R++N+ V EFK+ +  D+  +P A++RL+ A
Sbjct:   34 RTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKE---VGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQGIDLRNDPLAMQRLKEA 265          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ACICJ2.282e-6453.62Chaperone protein dnaK OS=Acidiphilium cryptum (st... [more]
DNAK_SHESH2.980e-6454.62Chaperone protein dnaK OS=Shewanella sediminis (st... [more]
DNAK_PSEHT2.980e-6455.65Chaperone protein dnaK OS=Pseudoalteromonas halopl... [more]
DNAK_METS42.980e-6455.51Chaperone protein dnaK OS=Methylobacterium sp. (st... [more]
DNAK_HAEDU2.980e-6453.36Chaperone protein dnaK OS=Haemophilus ducreyi GN=d... [more]
DNAK_ENT382.980e-6454.81Chaperone protein dnaK OS=Enterobacter sp. (strain... [more]
DNAK_CAUCR3.892e-6454.94Chaperone protein dnaK OS=Caulobacter crescentus G... [more]
DNAK_SERP55.084e-6454.39Chaperone protein dnaK OS=Serratia proteamaculans ... [more]
DNAK_SALTY5.084e-6454.39Chaperone protein dnaK OS=Salmonella typhimurium G... [more]
DNAK_SALTI5.084e-6454.39Chaperone protein dnaK OS=Salmonella typhi GN=dnaK... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
back to top