FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:223..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEP1 (Chaperone protein dnaK OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 127/239 (53.14%), Postives = 165/239 (69.04%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +  D E L+G +AK Q   NP NT+F  KRLIGRRF +  VQ D+KL P+K++        +    +   K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK++   D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYANDGEILVGQSAKRQAVTNPHNTLFAVKRLIGRRFEEDVVQKDIKLVPYKIVKANNGDAWV----EAAGKEMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDMRLIDYLVDEFKKESGMDLKNDPLALQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEE4 (Chaperone protein dnaK OS=Pseudomonas entomophila (strain L48) GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 126/239 (52.72%), Postives = 164/239 (68.62%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +  D E L+G +AK Q   NP NT+F  KRLIGRRF +  VQ D+KL P+K++        +    +   K  A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK++   D+  +P AL+RL+ A
Sbjct:   34 RTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLFAVKRLIGRRFDEEVVQKDIKLVPYKIVKASNGDAWV----QASGKDMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDMRLIDYLVDEFKKESGMDLKNDPLALQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PROA2 (Chaperone protein dnaK OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 126/241 (52.28%), Postives = 165/241 (68.46%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGE------EKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT   ERLIG AAK Q   N  NTVF  KR +GR+F +  V  + K+ P+KV           VN  GE      +K ++ +EIS+M+L KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+AYGLDKK  +   + V +FDLGGGTFD+S+L + +G+FEVK+T GDTHLGG+DFD  +++    EFK+++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSMVAFTKNGERLIGHAAKRQAITNAKNTVFSIKRFMGRKFDE--VPNEKKIAPYKV-----------VNINGEARVEIDDKNYSPQEISAMILQKMKQTAEDFLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVKRIINEPTAAALAYGLDKKKEN---EKVAVFDLGGGTFDISILELGDGVFEVKSTDGDTHLGGDDFDQTIIDFLADEFKKQEGIDLRTDAIALQRLKEA 258          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_HAEIN (Chaperone protein dnaK OS=Haemophilus influenzae GN=dnaK PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 122/238 (51.26%), Postives = 167/238 (70.17%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG ++  AV+TVPAYFND+QRQAT DAG IAGL+V RIINEPTAAA+A+GL    +S   + + ++DLGGGTFD+S++ I+    E  FEV AT G+THLGGEDFDNR++++ + EFK+++  D+  +  AL+R++ A
Sbjct:   34 RTTPSIIAYTDNETLVGQPAKRQAITNPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGESVTEAVITVPAYFNDAQRQATIDAGKIAGLDVKRIINEPTAAALAFGL---GSSKENQVIAVYDLGGGTFDISIIEIDNFDGEQTFEVLATGGNTHLGGEDFDNRVIDYIIDEFKKEQNIDLRNDAMALQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_HAEI8 (Chaperone protein dnaK OS=Haemophilus influenzae (strain 86-028NP) GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 122/238 (51.26%), Postives = 167/238 (70.17%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG ++  AV+TVPAYFND+QRQAT DAG IAGL+V RIINEPTAAA+A+GL    +S   + + ++DLGGGTFD+S++ I+    E  FEV AT G+THLGGEDFDNR++++ + EFK+++  D+  +  AL+R++ A
Sbjct:   34 RTTPSIIAYTDNETLVGQPAKRQAITNPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGESVTEAVITVPAYFNDAQRQATIDAGKIAGLDVKRIINEPTAAALAFGL---GSSKENQVIAVYDLGGGTFDISIIEIDNFDGEQTFEVLATGGNTHLGGEDFDNRVIDYIIDEFKKEQNIDLRNDAMALQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_CHLL2 (Chaperone protein dnaK OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 121/235 (51.49%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V  T T +RL+G AAK Q   NP NTVF  KR +GR++ +  V  + KL  + VI    +        K  +K ++ +E+S+M+L KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK +S   + V +FDLGGGTFD+S+L + +G+FEVK+T GDTHLGG+DFD +++++   EFK+++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSMVAVTKTGDRLVGQAAKRQAITNPKNTVFSIKRFMGRKYDE--VPNEKKLASYDVINEGGE-----ARVKINDKIYSPQEVSAMILQKMKQTAEDFLGEKVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKMSS---EKVAVFDLGGGTFDISILELGDGVFEVKSTDGDTHLGGDDFDQKIIDYLADEFKKQEGIDLRNDAIALQRLKEA 258          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_CHLCV (Chaperone protein dnaK OS=Chlamydophila caviae GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 122/234 (52.14%), Postives = 162/234 (69.23%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F   E L+G  AK Q   NP  T+   KR IGR+ S+  V+ ++K  P+KV +G     +  V    + KQ+  EEI + VLIKM+E AEAYLG  +  AV+TVPAYFNDSQR +TKDAG IAGL+V RII EPTAAA+AYG+DK     G+K + +FDLGGGTFD+S+L I +G+FEV +T GDTHLGG+DFD  ++   ++EFK+++  D+S +  AL+RL+ A
Sbjct:   40 RTTPSIVAFKGNETLVGIPAKRQAVTNPEKTLASTKRFIGRKHSE--VESEIKTVPYKVASGSNGDVVFLV----DGKQYTPEEIGAQVLIKMKETAEAYLGEPVTEAVITVPAYFNDSQRASTKDAGRIAGLDVKRIIPEPTAAALAYGIDK----AGDKKIAVFDLGGGTFDISILEIGDGVFEVLSTNGDTHLGGDDFDEVIIKWMIEEFKKQEGIDLSKDNMALQRLKDA 263          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_CELJU (Chaperone protein dnaK OS=Cellvibrio japonicus (strain Ueda107) GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 129/239 (53.97%), Postives = 163/239 (68.20%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + FT D E L+G +AK Q   NP NT+F  KRLIGR+F D  VQ D+ + P+K++A  AD     V  KGE+K  A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDK     G+  + ++DLGGGTFD+S++ I     E  FEV +T GDT LGGEDFD R++      FK+    D+  +P AL+RL+ A
Sbjct:   34 RTTPSIIAFTNDGEILVGQSAKRQAVTNPHNTLFAVKRLIGRKFKDDVVQKDISMVPYKIVA--ADNGDAWVEVKGEKK--APPQISAEVLKKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLDVKRIINEPTAAALAYGLDK---GKGDHTIAVYDLGGGTFDISIIEIADVDGEHQFEVLSTNGDTFLGGEDFDMRLIEFLADSFKKDTGIDLHNDPLALQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAE (Chaperone protein dnaK OS=Pseudomonas aeruginosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.410e-60
Identity = 127/239 (53.14%), Postives = 168/239 (70.29%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT++  KRLIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK++   ++ G+P A++RL+ A
Sbjct:   34 RTTPSIIAYTNDGETLVGQPAKRQAVTNPQNTLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESGINLKGDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAB (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.410e-60
Identity = 127/239 (53.14%), Postives = 168/239 (70.29%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G  AK Q   NP NT++  KRLIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK++   ++ G+P A++RL+ A
Sbjct:   34 RTTPSIIAYTNDGETLVGQPAKRQAVTNPQNTLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESGINLKGDPLAMQRLKEA 265          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PSEP12.611e-6053.14Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]
DNAK_PSEE42.611e-6052.72Chaperone protein dnaK OS=Pseudomonas entomophila ... [more]
DNAK_PROA22.611e-6052.28Chaperone protein dnaK OS=Prosthecochloris aestuar... [more]
DNAK_HAEIN2.611e-6051.26Chaperone protein dnaK OS=Haemophilus influenzae G... [more]
DNAK_HAEI82.611e-6051.26Chaperone protein dnaK OS=Haemophilus influenzae (... [more]
DNAK_CHLL22.611e-6051.49Chaperone protein dnaK OS=Chlorobium limicola (str... [more]
DNAK_CHLCV2.611e-6052.14Chaperone protein dnaK OS=Chlamydophila caviae GN=... [more]
DNAK_CELJU2.611e-6053.97Chaperone protein dnaK OS=Cellvibrio japonicus (st... [more]
DNAK_PSEAE3.410e-6053.14Chaperone protein dnaK OS=Pseudomonas aeruginosa G... [more]
DNAK_PSEAB3.410e-6053.14Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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