FC875487

Overview
NameFC875487
Unique NameFC875487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875487_ssr42 microsatellite FC875487_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3062 contig Ccv1_Contig3062:86..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  420 NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            + LP   DWR+ G + GVKDQG+CGSCW+FSA  A+E  + + TG L+SLSEQ+LVDCD         S + GC+GGLM+ AFE+
Sbjct:   16 DSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDR--------SYNEGCDGGLMDYAFEF 92          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 56/162 (34.57%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  192 KFSKTYATQEEHDYRFRVFKANLRRAK*RQL-LDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            K+ K+Y +  E + RF +FK  LR         + +   G+ +F+DLT  EFR  +L           + +        LP+  DWR  GAV  +K QG CG CW+FSA   +EG + + TG L+SLSEQ+L+DC    +         GCNGG +   F++
Sbjct:   48 KYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLRFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQF 202          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 71/204 (34.80%), Postives = 100/204 (49.02%), Query Frame = 3
Query:  126 SDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVT----KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN---DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYYSGWWGERERTTLP 716
            + G Q+ D  L+AE  +  +K+K++K+Y+ +EE   R  V++ N+R  K     +    +  T    KF D T  EFR+        + +PA A   P    +    LP   DWR+ G VT V++QG CGSCW+F+A GA+EG  F  TG L  LS Q L+DC            + GC  G  + AFEY     G     T P
Sbjct:   15 ASGAQAHDPKLDAE--WKDWKTKYAKSYSPKEEA-LRRAVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSI----DNIPIPA-AMTDPHAQNHVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVG-------NKGCQSGTAHQAFEYVLKNKGLEAEATYP 203          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATL2_PARTE (Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT00022898001 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 64/172 (37.21%), Postives = 92/172 (53.49%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGV--TKFSDLTPSEFRRQFLGLNRRLRLPADAQ-KAPILPTNDLPTDFDWRDHGAVT--GVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            ++ +K K+++ Y +Q +  YRF+VF  NL   +  Q    +A + +   +F+D++  EF   +L L    R+P  A+  A          + DW D+  V    VK+QG+CGSCW+FSA GALE    +   +   LSEQ LVDC    D E       GCNGG M+SAFEY
Sbjct:   26 YANWKMKYNRRYTSQRDEMYRFKVFSDNLNYIRAFQDSTESATYTLELNQFADMSQQEFASTYLSL----RVPKTAKLNASNANFQYKGAEVDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNKKYELSEQDLVDCSGPYDNE-------GCNGGWMDSAFEY 186          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  420 NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYYSGWWGERERTTLP 716
            +DLP   DWR++GAV  VK+QG CGSCW+FS   A+EG + + TG+L+SLSEQQLVDC          + + GC GG MN AF++     G     T P
Sbjct:    1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT---------TANHGCRGGWMNPAFQFIVNNGGINSEETYP 90          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 58/168 (34.52%), Postives = 79/168 (47.02%), Query Frame = 3
Query:  183 FKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLL----DPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            FK   ++TY +  E   RF +F+  LR+     +     + T    + KFSD+T  EFR   L  N   R   +  +   L     P   DWR  G V  V++QG CGSCW+ S   A+E    + +G  V LS QQLVDC        +   + GCNGG   + FEY
Sbjct:   26 FKKTHARTYKSLREEKLRFNIFQDTLRQIAEHNVKYENGESTYYLAINKFSDITDEEFR-DMLMKNEASRPNLEGLEVADLTVGAAPESIDWRSKGVVLPVRNQGECGSCWALSTAAAIESQSAIKSGSKVPLSPQQLVDC-------STSYGNHGCNGGFAVNGFEY 185          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 3
Query:  153 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADA---QKAPILPTND-----LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFE 671
            L N++  F  F  K++KTY + EE   +   FK NL+    + +    AV  + ++SDL  +   R+  G    L+    A    +  ++   D     LP   DWRD   VT VK+Q  CGSCW+FS    +E  + +   + ++LSEQ LV+CD         + ++GC GGLM+ A E
Sbjct:   25 LNNSDELFKNFAIKYNKTYVSDEERAIKLENFKNNLKMINEKNMASKYAVFDINEYSDLNKNALLRRTTGFRLGLKKNPSAFTMTECSVVVIKDEPQALLPETLDWRDKHGVTPVKNQMECGSCWAFSTIANIESLYNIKYDKALNLSEQHLVNCD---------NINNGCAGGLMHWALE 196          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 59/183 (32.24%), Postives = 94/183 (51.37%), Query Frame = 3
Query:  183 FKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDP----TAVHGVTKFSDLTPSEFRRQFLGLNRRLR------LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYYSGWWGERE 701
            +K  ++K Y   ++  +R  +++ N++  +   L       T   G+ +F+D+T  EF+ ++L    R        +P +A    +      P   DWR+ G VT VKDQG CGSCW+FS TG +EG +  +    +S SEQQLVDC            ++GC+GGLM +A++Y   +  E E
Sbjct:   24 WKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAV------PDKIDWRESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWG-------NNGCSGGLMENAYQYLKQFGLETE 192          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 62/172 (36.05%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLR--RAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ-KAPILPTNDLPTDFDWRDHGAVT--GVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            ++ +K K+++ Y  Q +  YR++VF  NL   RA      + T    + +F+D++  EF + +L L    ++P  A+  A          + DW D+  V    VK+QG+CGSCW+FSA GALE    +       LSEQ LVDC    D       + GCNGG M+SAFEY
Sbjct:   26 YANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSL----KVPRTAKLNAANSNFQYKGAEVDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCSGPYD-------NDGCNGGWMDSAFEY 186          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 47/83 (56.63%), Postives = 55/83 (66.27%), Query Frame = 3
Query:  426 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            +P   DW   G VT VK+QG CGSCW+FSATGALEG  F  TG+LVSLSEQ LVD             + GCNGGLM++AF+Y
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRP-------QGNQGCNGGLMDNAFQY 76          
The following BLAST results are available for this feature:
BLAST of FC875487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CYSPL_SOLLC2.081e-2052.94Low-temperature-induced cysteine proteinase (Fragm... [more]
ACTN_ACTCH2.081e-2034.57Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CATJ_MOUSE2.717e-2034.80Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CATL2_PARTE3.549e-2037.21Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CPGP2_ZINOF6.053e-2047.47Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATLL_PHACE6.053e-2034.52Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
CATV_GVCP7.906e-2032.60Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATLL_FASHE3.924e-1932.24Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CATL1_PARTE3.924e-1936.05Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATL1_SHEEP6.693e-1956.63Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404E03EF CTVClemen1 Citrus clementina cDNA clone C31404E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875487 ID=FC875487; Name=FC875487; organism=Citrus clementina; type=EST; length=721bp
GACTGAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGGCGACGA
TGCTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAACCTCCGCCGAGCAAAGTGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAA
GGCTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACTACTCAGGCTGGTGGGGTGAGCGAGA
GAGGACTACCCTACCTGGGAC
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