FC875487

Overview
NameFC875487
Unique NameFC875487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875487_ssr42 microsatellite FC875487_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3062 contig Ccv1_Contig3062:86..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 3
Query:  426 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            LP+  DWR  GAV  +K+Q  CGSCW+FSA  A+E  + + TG+L+SLSEQ+LVDCD         +   GCNGG MN+AF+Y
Sbjct:    1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD---------TASHGCNGGWMNNAFQY 74          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 62/175 (35.43%), Postives = 91/175 (52.00%), Query Frame = 3
Query:  156 LNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLD-PTAVHGVTKFSDLTPSEFRRQFLGLNRRLR-LPADAQKAPIL-PTNDLPTDFDWRD-HGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAF 668
            L  +  F LF+ +F+++Y + EEH +R  +F  NL +A+  Q  D  TA  GVT FSDLT  EF  Q  G  R    +P+  ++     P   +P   DWR    A++ +KDQ  C  CW+ +A G +E    +S  + V +S Q+L+DC         G C  GC+GG +  AF
Sbjct:   36 LELKEAFKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFG-QLYGYRRAAGGVPSMGREIRSEEPEESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDC---------GRCGDGCHGGFVWDAF 200          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 68/206 (33.01%), Postives = 100/206 (48.54%), Query Frame = 3
Query:  126 SDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPA-----DAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYYSGWWGERERTTLP 716
            + G  + D  L+AE  +  +K+K++K+Y+  EE + +  V++ NL+  +     +    +G T     F+D T  EFR+    +     +PA      AQK   +    LP   DWR  G VT V++QG CGSCW+F+A GA+EG  F  TG L  LS Q L+DC            ++GC  G  + AF Y     G     T P
Sbjct:   15 ASGAPARDPNLDAE--WQDWKTKYAKSYSPVEE-ELKRAVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDI----LIPAAVTNPSAQKQVSI---GLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDC-------SKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYP 203          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_MACMU (Cathepsin K OS=Macaca mulatta GN=CTSK PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 61/177 (34.46%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  171 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAP---ILPTND--LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            H+ L+K    K Y ++ +   R  +++ NL+      L     VH     +    D+T  E  ++  GL    ++PA   ++     +P  +   P   D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E D         GC GG M +AF+Y
Sbjct:   25 HWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTNEEVVQKMTGL----KVPASHSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQY 188          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_MACFA (Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 61/177 (34.46%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  171 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAP---ILPTND--LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            H+ L+K    K Y ++ +   R  +++ NL+      L     VH     +    D+T  E  ++  GL    ++PA   ++     +P  +   P   D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E D         GC GG M +AF+Y
Sbjct:   25 HWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTNEEVVQKMTGL----KVPASHSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQY 188          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 60/176 (34.09%), Postives = 89/176 (50.57%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAP---ILPTND--LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            + L+K  + K Y ++ +   R  +++ NL+      L     VH     +    D+T  E  ++  GL    ++PA   ++     +P  +   P   D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E D         GC GG M +AF+Y
Sbjct:   26 WELWKKTYRKQYNSKGDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGL----KVPASRSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQY 188          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 60/175 (34.29%), Postives = 86/175 (49.14%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND----LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            + L+K  + K Y ++ +   R  +++ NL+      L     VH     +    D+T  E  ++  GL      P+ ++    L   D     P   D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E D         GC GG M +AF+Y
Sbjct:   27 WELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVP---PSHSRSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQY 189          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_RABIT (Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 60/175 (34.29%), Postives = 86/175 (49.14%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND----LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            + L+K  +SK Y ++ +   R  +++ NL+      L     VH     +    D+T  E  ++  GL      P+ +     L   D     P   D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E         + GC GG M +AF+Y
Sbjct:   26 WELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVP---PSRSHSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE---------NYGCGGGYMTNAFQY 188          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 62/181 (34.25%), Postives = 85/181 (46.96%), Query Frame = 3
Query:  171 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH----GVTKFSDLTPSEFRRQFLGL---------NRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            H+ L+K    K Y  + +   R  +++ NL+      L     VH     +    D+T  E  ++  GL         N  L +P    +AP           D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E D         GC GG M +AF+Y
Sbjct:   25 HWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAP--------DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQY 188          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 60/175 (34.29%), Postives = 86/175 (49.14%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND----LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            + L+K  + K Y ++ +   R  +++ NL+      L     VH     +    D+T  E  ++  GL      P+ ++    L   D     P   D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E D         GC GG M +AF+Y
Sbjct:   27 WDLWKKTYRKQYNSKVDELSRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVP---PSHSRSNDTLYIPDWESRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQY 189          
The following BLAST results are available for this feature:
BLAST of FC875487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
ERVB_TABDI1.142e-1851.81Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATW_HUMAN1.947e-1835.43Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATJ_RAT4.338e-1833.01Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATK_MACMU5.666e-1834.46Cathepsin K OS=Macaca mulatta GN=CTSK PE=1 SV=1[more]
CATK_MACFA5.666e-1834.46Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV... [more]
CATK_BOVIN5.666e-1834.09Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]
CATK_PIG7.400e-1834.29Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]
CATK_RABIT9.665e-1834.29Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 ... [more]
CATK_HUMAN9.665e-1834.25Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATK_CANFA1.262e-1734.29Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404E03EF CTVClemen1 Citrus clementina cDNA clone C31404E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875487 ID=FC875487; Name=FC875487; organism=Citrus clementina; type=EST; length=721bp
GACTGAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGGCGACGA
TGCTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAACCTCCGCCGAGCAAAGTGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAA
GGCTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACTACTCAGGCTGGTGGGGTGAGCGAGA
GAGGACTACCCTACCTGGGAC
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