FC875487

Overview
NameFC875487
Unique NameFC875487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875487_ssr42 microsatellite FC875487_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3062 contig Ccv1_Contig3062:86..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 3
Query:  141 SEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND----LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            S + +L+ +  + L+K    K Y ++ +   R  +++ NL++     L     VH     +    D+T  E  ++  GL      P+ +     L T +    +P   D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E         + GC GG M +AF+Y
Sbjct:   17 SPEEMLDTQ--WELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLRIP---PSRSYSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTE---------NYGCGGGYMTTAFQY 188          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 55/167 (32.93%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            F  + +  +K +A + E+ YRF VF  N      ++ ++  A   +  F+D+T  EF +  LG+   +       KA +      P   DWR    +   KDQG CGSCW+F  T  LEG      G+L S SEQQLVDCD         + D+GC GG  +++ ++
Sbjct:   18 FKQWAATHNKVFANRAEYLYRFAVFLDN------KKFVEANANTELNVFADMTHEEFIQTHLGMTYEVPETTSNVKAAVKAA---PESVDWRS--IMNPAKDQGQCGSCWTFCTTAVLEGRVNKDLGKLYSFSEQQLVDCD---------ASDNGCEGGHPSNSLKF 164          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 62/172 (36.05%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  183 FKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNR----RLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            +++K  K Y   EE   R  V++ N +  +          H  T     F DLT +EF +   G  R    R+ +  D Q   +      P   DWR  G VT VK+QG C S W+FSATG+LEG  F  TG LV LSEQ L+DC          +    C+GG M +AF+Y
Sbjct:   32 WRTKHGKAYNVNEER-LRRAVWEKNFKMIELHNWEYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFRRQKIKRMHVFQDHQFLYV------PKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDC-------MGSNVTHDCSGGFMQNAFQY 189          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  426 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            LP   DWR+ GAV  VK+QG CGSCW+F A  A+EG + + TG+L+SLSEQQLVDC          + + GC GG    AF+Y
Sbjct:    3 LPDSIDWREKGAVVPVKNQGGCGSCWAFDAIAAVEGINQIVTGDLISLSEQQLVDC---------STRNHGCEGGWPYRAFQY 76          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 59/178 (33.15%), Postives = 89/178 (50.00%), Query Frame = 3
Query:  156 LNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLD-PTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND-----LPTDFDWRD-HGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAF 668
            L  +  F+LF+ +++++Y+  EE+  R  +F  NL +A+  +  D  TA  GVT FSDLT  EF R    L    R+  +A K      ++     +P   DWR   G ++ VK Q +C  CW+ +A G +E    +   + V LS Q+L+DC         G C  GC GG +  AF
Sbjct:   36 LELKQAFTLFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEEEDLGTAEFGVTPFSDLTEEEFGR----LYGHRRMDGEAPKVGREVGSEEWGESVPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDC---------GRCGDGCRGGFVWDAF 200          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 65/188 (34.57%), Postives = 94/188 (50.00%), Query Frame = 3
Query:  147 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLN-RRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGC----------NGGLMNSA 665
            D +L+ E  +  +K K+ K Y+ +EE   R  V++ N+++ K     +    HG T     F D+T  EFR+  + +    ++     QK   L  N LP   +W+  G VT V+ QG C SCW+FS TGA+EG  F  TG+L+ LS Q LVDC     P+ +  C  G           NGGL + A
Sbjct:   22 DPILDVE--WQKWKIKYGKAYSLEEEGQKR-AVWEDNMKKIKLHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKR--LSVN-LPKFINWKKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSR---PQGNWGCYLGNTYLALHYVMENGGLESEA 200          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 61/207 (29.47%), Postives = 100/207 (48.31%), Query Frame = 3
Query:   93 GDDAMIRQVVPSDGEQSEDHLLNA-EHHFSLFKSKFSKTYATQEEHDYRFRVFKAN------LRRAK*RQLLDPTAVHGVTKFSDLTPSEFR-RQFLGLNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYYS 680
            G+  ++++ +    +  E   +   E  +  + +   K Y  Q+E+++R  +F++N      + +   + L+  T    +   +DLT  EF  R  L L  +  L    Q +       +  LP   DWR  GAVT V++QG CGSC++F+   ALE  H   TG L+ LS Q +VDC            ++GC+GG M +AF+Y S
Sbjct:   63 GESTVVQEFLKKTEDNGEQRAMEKLETEWKDYVTALGKHY-DQKENNFRMAIFESNELMTERINKKYEQGLVSYTTA--LNDLADLTDEEFMVRNGLRLPNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLG-------NNGCSGGYMPTAFQYAS 259          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND----LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            + L+K    K Y ++ +   R  +++ NL++     L      H     +    D+T  E  ++  GL      P+ +     L T +    +P   D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E         + GC GG M +AF+Y
Sbjct:   26 WELWKKTHGKQYNSKVDEISRRLIWEKNLKKISVHNLEASLGAHTYELAMNHLGDMTSEEVVQKMTGLRVP---PSRSFSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVSE---------NYGCGGGYMTTAFQY 188          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 61/171 (35.67%), Postives = 81/171 (47.37%), Query Frame = 3
Query:  183 FKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            +++K  KTY   EE   R  V++ N +  +          H  T     F DLT  EF +   G  R+       +K  I   +    +P   DWR  G VT VK+QG C S W+FSATG+LEG  F  T  L+ LSEQ L+DC          +   GC+GG M  AF+Y
Sbjct:   32 WRTKHGKTYNMNEERLKR-AVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQ-----KIKKTHIFQDHQFLYVPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDC-------MGSNVTHGCSGGFMQYAFQY 189          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 54/167 (32.34%), Postives = 81/167 (48.50%), Query Frame = 3
Query:  186 KSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDP----TAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            ++ F+ T+    E +     F+ +L R +    L P    TA +G+ +FS L P EF+  +L           A+    +P   LP  FDWRD   VT V++Q  CG CW+FS  GA+E A+ +    L  LS QQ++DC +          + GCNGG   +A  +
Sbjct:   26 RAPFTPTWPRSREREAA--AFRESLNRHRYLNSLFPSENSTAFYGINQFSYLFPEEFKAIYLRSKPSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCSYN---------NYGCNGGSTLNALNW 181          
The following BLAST results are available for this feature:
BLAST of FC875487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CATK_MOUSE2.812e-1732.80Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
ACP1_ENTHI3.673e-1732.93Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
TEST2_MOUSE8.182e-1736.05Testin-2 OS=Mus musculus PE=2 SV=1[more]
CPGP1_ZINOF8.182e-1750.60Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
CATW_FELCA8.182e-1733.15Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
CATM_MOUSE8.182e-1734.57Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CATL_BRUPA1.069e-1629.47Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CATK_RAT1.069e-1633.14Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
TEST2_RAT1.396e-1635.67Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATO_HUMAN1.396e-1632.34Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404E03EF CTVClemen1 Citrus clementina cDNA clone C31404E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875487 ID=FC875487; Name=FC875487; organism=Citrus clementina; type=EST; length=721bp
GACTGAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGGCGACGA
TGCTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAACCTCCGCCGAGCAAAGTGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAA
GGCTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACTACTCAGGCTGGTGGGGTGAGCGAGA
GAGGACTACCCTACCTGGGAC
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