FC875487

Overview
NameFC875487
Unique NameFC875487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875487_ssr42 microsatellite FC875487_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3062 contig Ccv1_Contig3062:86..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  429 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            P   DWRD GAVT VK+Q  CGSCW+FS    +EG + + TG+L+SLSEQ+L+DCD             GC GG    + +Y
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRR---------SHGCKGGYQTGSIQY 74          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  426 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            LP   DWR  GAVT VK+QG+CGSCW+FS    +E  + + TG L+SLSEQ+LVDCD +         + GC GG    A++Y
Sbjct:    1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK---------NHGCLGGAFVFAYQY 74          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 54/126 (42.86%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  324 DLTPSEFRRQFLGL---------NRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            D+T  E  R   GL         N  L +P  + +AP           DWR  G VT VKDQG CGSCW+FS+ GALEG     TG+L+SLS Q LV C          S ++GC GG M +AFEY
Sbjct:   85 DMTSEEVVRTMTGLRVPRSRPRPNGTLYVPDWSSRAPAA--------VDWRRKGYVTPVKDQGQCGSCWAFSSVGALEGQLKRRTGKLLSLSPQNLVYC---------VSNNNGCGGGYMTNAFEY 193          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 63/201 (31.34%), Postives = 93/201 (46.27%), Query Frame = 3
Query:  156 LNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRA----K*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGL-----NRRLRLPADAQKAPILPTN-----DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYYSGWWGERERTTLP 716
            L+ +  +  +K K+ K Y+ +EE   R  V++ N+++     +   L   T    +  F+D+T  EF+   +G      N   RL   A  +   P +      LP   DWR+ G VT V+ QG C SCW+F  TGA+EG  F  TG+L+ LS Q L+DC            + GC  G   +AF+Y     G     T P
Sbjct:   23 LSLDVQWQEWKIKYEKLYSPEEEVLKRV-VWEENVKKIELHNRENSLGKNTYTMEINDFADMTDEEFKDMIIGFQLPVHNTEKRLWKRALGS-FFPNSWNWRDALPKFVDWRNEGYVTRVRKQGGCSSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLIDC-------SKPQGNRGCLWGNTYNAFQYVLHNGGLEAEATYP 214          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 48/121 (39.67%), Postives = 63/121 (52.07%), Query Frame = 3
Query:  294 TAVHGVTKFSDLTPSEFRRQFLGLNRRL--RLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGG 650
            TA +GV +FS L P EF+  +LG       R PA+ Q+   +P   LP  FDWRD   V  V++Q  CG CW+FS   A+E A  +    L  LS QQ++DC            +SGC GG
Sbjct:   55 TAFYGVNQFSYLFPEEFKALYLGSKYAWAPRYPAEGQRP--IPNVSLPLRFDWRDKHVVNPVRNQEMCGGCWAFSVVSAIESARAIQGKSLDYLSVQQVIDCSFN---------NSGCLGG 164          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 3
Query:  429 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYY--SGWWGERE 701
            P   DWR+ GAVT VK+Q  CGSCW+FS    +EG + + TG+L+SLSEQ+L+DC++            GC+GG    + +Y   +G   ERE
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCEYR---------SHGCDGGYQTPSLQYVVDNGVHTERE 85          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 53/174 (30.46%), Postives = 85/174 (48.85%), Query Frame = 3
Query:  156 LNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLD-PTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND-LPTDFDWRD-HGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAF 668
            L  +  F LF+ +F+++Y    E+  R  +F  NL +A+  Q  D  TA  G T FSDLT  EF + +       R P   +K       + +P   DWR     ++ VK+QG+C  CW+ +A   ++    +   + V +S Q+L+DC+          C +GCNGG +  A+
Sbjct:   34 LELKEVFKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGTAEFGETPFSDLTEEEFGQLYGQERSPERTPNMTKKVESNTWGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCER---------CGNGCNGGFVWDAY 198          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.000e-14
Identity = 63/198 (31.82%), Postives = 93/198 (46.97%), Query Frame = 3
Query:  147 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVT----KFSDLTPSEFRRQFLGLN----RRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYYSGWWGERERTTLP 716
            D  L+AE  +  +K K++K+Y+ +EE   R  V++  L+  K     +    +G T    +F D T  EFR+  + ++    R  +     +   ILP        DWR  G VT V+ QG C +CW+F+ TGA+E      TG+L  LS Q LVDC            ++GC GG   +AF+Y     G     T P
Sbjct:   22 DSSLDAE--WQDWKIKYNKSYSLKEEKLKRV-VWEEKLKMIKLHNRENSLGKNGFTMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKREAGSILPKF-----VDWRKKGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDC-------SKPQGNNGCLGGDTYNAFQYVLHNGGLESEATYP 204          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 54/174 (31.03%), Postives = 78/174 (44.83%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFL-------GLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            F  FK  F+K Y T E      + F A+L        ++      + +FSD++  EF+ Q+L        L +   L A AQ   I   N +P + D R  G VT +K+Q ACGSCW+FS    +E  +       + LSEQ+LVDC          +   GC G  + +   Y
Sbjct:   26 FEEFKKAFNKHYVTPEAEQEARQNFLASLEH------IEKAGKGRINQFSDMSLEEFKNQYLMSDQAYEALKKEFDLDAGAQACQIGAVN-IPNEIDLRALGYVTKIKNQVACGSCWAFSGVATVESNYLSYDNVSLDLSEQELVDC----------ASQHGCGGDTVLNGLRY 182          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  426 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            +P   DWRD+GAV  VK+QG CG CW+F+A   +EG + +  G LV LSEQ+++DC          +   GC GG +N A+++
Sbjct:    2 VPQSIDWRDYGAVNEVKNQGPCGGCWAFAAIATVEGIYKIRKGNLVYLSEQEVLDC----------AVSYGCKGGWVNRAYDF 74          
The following BLAST results are available for this feature:
BLAST of FC875487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MEX2_JACME5.303e-1646.34Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
ERVC_TABDI5.303e-1648.19Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATK_CHICK6.926e-1642.86Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
CATQ_RAT1.181e-1531.34Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATO_MOUSE1.181e-1539.67Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
MEX1_JACME1.543e-1543.01Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATW_MOUSE7.658e-1530.46Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATR_MOUSE1.000e-1431.82Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
PEPT1_PSOOV1.706e-1431.03Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]
MDO1_PSEMR2.228e-1442.17Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC31404E03EF CTVClemen1 Citrus clementina cDNA clone C31404E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875487 ID=FC875487; Name=FC875487; organism=Citrus clementina; type=EST; length=721bp
GACTGAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGGCGACGA
TGCTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAACCTCCGCCGAGCAAAGTGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAA
GGCTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACTACTCAGGCTGGTGGGGTGAGCGAGA
GAGGACTACCCTACCTGGGAC
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