FC875487

Overview
NameFC875487
Unique NameFC875487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875487_ssr42 microsatellite FC875487_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3062 contig Ccv1_Contig3062:86..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CYSP_THEAN (Cysteine proteinase OS=Theileria annulata GN=TACP PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 64/216 (29.63%), Postives = 98/216 (45.37%), Query Frame = 3
Query:  108 IRQV--VPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFR---------RQFLGLNRRLRLPADAQKAPILPTN-----------DLPT----DFDWRDHGAVTGVKDQGA-CGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            IRQ   + SD E   D L+     F  F  K+ K + + ++   RF  F+ N    K  +  +P ++  + KFSDL+  EF+         + +  L++ L     + K PI  +            DL      + +W    AV+ +KDQG  CGSCW+FS+  ++E  + L   +   LSEQ+LV+CD             GC GGL  +A EY
Sbjct:  100 IRQTGKITSDAESELDMLIE----FDAFVEKYKKVHRSFDQRVQRFLTFRKNYHIVKTHKPTEPYSLD-LNKFSDLSDEEFKALYPVITPPKTYTSLSKHLEFKKMSHKNPIYISKLKKAKGIEEIKDLSLITGENLNWARTDAVSPIKDQGDHCGSCWAFSSIASVESLYRLYKNKSYFLSEQELVNCD---------KSSMGCAGGLPITALEY 301          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 53/174 (30.46%), Postives = 81/174 (46.55%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFL-------GLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            F  FK  F+KTYAT E+ +   + F  +L+  +  +         +   SDL+  EF+ QFL        L  +  L A+     I   + LP++ D R    VT ++ QG CGSCW+FS   + E A+       + L+EQ+LVDC          +  +GC+G  +    EY
Sbjct:   26 FEEFKKAFNKTYATPEKEEVARKNFLESLKYVESNK-------GAINHLSDLSLDEFKNQFLMNANAFEQLKTQFDLNAETYACSINSVS-LPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDC----------ASQNGCHGDTIPRGIEY 181          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 53/174 (30.46%), Postives = 79/174 (45.40%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFL-------GLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            F  FK  F+K YAT EE +   + F  +L+  +  +         +   SDL+  EF+ ++L        L  +  L A+     I   N +P++ D R    VT ++ QG CGSCW+FS   A E A+       + LSEQ+LVDC          +   GC+G  +    EY
Sbjct:   26 FEEFKKAFNKNYATVEEEEVARKNFLESLKYVEANK-------GAINHLSDLSLDEFKNRYLMSAEAFEQLKTQFDLNAETSACRINSVN-VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC----------ASQHGCHGDTIPRGIEY 181          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 49/174 (28.16%), Postives = 79/174 (45.40%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFL-------GLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            F  +K  F+K+YAT E+ +   + F  +++  +       +    +   SDL+  EF+ +FL        L  +  L A+     I    + P + D R    VT ++ QG CGSCW+FS   A E A+     + + L+EQ+LVDC          +   GC+G  +    EY
Sbjct:   26 FEEYKKAFNKSYATFEDEEAARKNFLESVKYVQ-------SNGGAINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSI--NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC----------ASQHGCHGDTIPRGIEY 180          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 61/201 (30.35%), Postives = 88/201 (43.78%), Query Frame = 3
Query:  135 EQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKAN-LRRAK*RQLLDP---TAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP----------------TNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGEL-VSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            E  +D++  A   F   K   +K Y   +E   RF  FK   ++  K  +++     T V  V ++SD +  EF   F  L   L +P D +   I+P                + D P   D+R        KDQG CGSCW+F+A G  E  +  +  E+ +S SEQQ+VDC  E         + GC+GG    AF Y
Sbjct:  150 ESMQDNIKYASKFFKYMKEN-NKKYENMDEQLQRFENFKIRYMKTQKHNEMVGKNGLTYVQKVNQYSDFSKEEFDNYFKKL---LSVPMDLKSKYIVPLKKHLANTNLISVDNKSKDFPDSRDYRSKFNFLPPKDQGNCGSCWAFAAIGNFEYLYVHTRHEMPISFSEQQMVDCSTE---------NYGCDGGNPFYAFLY 337          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  426 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            +P   DWRD+GAVT VK+Q  CG+CW+F+A   +E  + +  G L  LSEQQ++DC          +   GC GG    AFE+
Sbjct:    2 VPQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKIKKGILEPLSEQQVLDC----------AKGYGCKGGWEFRAFEF 74          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 56/205 (27.32%), Postives = 88/205 (42.93%), Query Frame = 3
Query:  138 QSEDHLLNAEHHFSLFK--SKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH--GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI---LPTNDLPTDF-------------------DWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            + ED + N ++    FK   + +K Y   +E   +F +FK N    K    L+  A++   V +FSD +  E +  F  L        +    P    L  N L ++F                   D+R+ G V   KDQG CGSCW+F++ G +E         ++S SEQ++VDC  +         + GC+GG    +F Y
Sbjct:  211 KKEDPINNIKYASKFFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNKLNKNAMYKKKVNQFSDYSEEELKEYFKTLLHVPNHMIEKYSKPFENHLKDNILISEFYTNGKRNEKDIFSKVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNIESVFAKKNKNILSFSEQEVVDCSKD---------NFGCDGGHPFYSFLY 406          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVS (Cysteine proteinase OS=Plasmodium vivax (strain Salvador I) PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 50/189 (26.46%), Postives = 85/189 (44.97%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN---------------------DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGE-LVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            F  F +K+ ++Y    E   +++ FK N  + K     +      V +FSD +  +F   F  L   + +P   +K  ++P +                     D+P   D+R+ G V   KDQG CGSCW+F++ G +E  +     + +++LSEQ++VDC            + GC+GG    +F Y
Sbjct:  237 FFNFMNKYKRSYKDINEQMEKYKNFKMNYLKIKKHNETNQMYKMKVNQFSDYSKKDFESYFRKL---VPIPDHLKKKYVVPFSSMNNGKGKNVVTSSSGANLLADVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNVECMYAKEHNKTILTLSEQEVVDC---------SKLNFGCDGGHPFYSFIY 413          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  429 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG---ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            P   DWR  G VT ++DQG CGSC++F +  ALEG   +  G   E + LSE+ +V C  E         ++GCNGGL ++ + Y
Sbjct:   95 PKAVDWRKKGKVTPIRDQGNCGSCYTFGSIAALEGRLLIEKGGDSETLDLSEEHMVQCTRE-------DGNNGCNGGLGSNVYNY 172          
The following BLAST results are available for this feature:
BLAST of FC875487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CYSP_THEAN2.228e-1429.63Cysteine proteinase OS=Theileria annulata GN=TACP ... [more]
PEPT1_EURMA2.910e-1430.46Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
PEPT1_DERFA4.964e-1430.46Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
PEPT1_DERPT9.361e-1328.16Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]
CYSP_PLAVN9.361e-1330.35Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
BROM2_ANACO2.085e-1242.17Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP_PLAFA4.646e-1227.32Trophozoite cysteine proteinase OS=Plasmodium falc... [more]
CYSP_PLAVS3.933e-1126.46Cysteine proteinase OS=Plasmodium vivax (strain Sa... [more]
CPP1_ENTHI3.933e-1140.00Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31404E03EF CTVClemen1 Citrus clementina cDNA clone C31404E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875487 ID=FC875487; Name=FC875487; organism=Citrus clementina; type=EST; length=721bp
GACTGAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGGCGACGA
TGCTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAACCTCCGCCGAGCAAAGTGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAA
GGCTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACTACTCAGGCTGGTGGGGTGAGCGAGA
GAGGACTACCCTACCTGGGAC
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