FC875487

Overview
NameFC875487
Unique NameFC875487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875487_ssr42 microsatellite FC875487_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3062 contig Ccv1_Contig3062:86..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 64/170 (37.65%), Postives = 101/170 (59.41%), Query Frame = 3
Query:  171 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHG-AVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            HF+ +  +  KTY+++E + +R +VF  N R+ +     + T   G+ +FSD++ +E + ++L    +      A K+  L  T   P+  DWR  G  V+ VK+QGACGSCW+FS TGALE A  +++G++++L+EQQLVDC    +       + GC GGL + AFEY
Sbjct:   32 HFTSWMKQHQKTYSSRE-YSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWSEPQ---NCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEY 190          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 58/173 (33.53%), Postives = 97/173 (56.07%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVH-GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-----PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            F  + +++ + Y   +E   RF++FK N+   +     +  +   G+ +F+D+T +EF  Q+ GL+    LP + ++ P++  +D+     P   DWRD GAVT VK+QG CGSCW+F++   +E  + +  G LVSLSEQQ++DC          +   GC GG +N A+ +
Sbjct:   37 FEEWMAEYGRVYKDNDEKMLRFQIFKNNVNHIETFNNRNGNSYTLGINQFTDMTNNEFVAQYTGLS----LPLNIKREPVVSFDDVDISSVPQSIDWRDSGAVTSVKNQGRCGSCWAFASIATVESIYKIKRGNLVSLSEQQVLDC----------AVSYGCKGGWINKAYSF 195          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 3
Query:  141 SEDHLLNAEHHFSLFKS---KFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            S+D L + E    LF S     +K Y   +E  YRF +FK NL         + +   G+ +F+DL+  EF  +++G      +     +  I   T +LP + DWR  GAVT V+ QG+CGSCW+FSA   +EG + + TG+LV LSEQ+LVDC+             GC GG    A EY
Sbjct:   34 SQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR---------SHGCKGGYPPYALEY 206          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 65/163 (39.88%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  198 SKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN----DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            +K Y T +E   R+  FK N+             V G+ + +DL+  E+R  +LG    ++L    ++   L  N      P + DWR+  AVT VKDQG CGSC+SFS TG++EG   + TG+LVSLSEQ ++DC        S   + GCNGGLM +AFEY
Sbjct:   42 NKAY-THKEFMPRYEEFKKNMDYVHNWNSKGSKTVLGLNQHADLSNEEYRLNYLGTRAHIKLNGYHKRNLGLRLNRPQFKQPLNVDWREKDAVTPVKDQGQCGSCYSFSTTGSVEGVTAIKTGKLVSLSEQNILDC-------SSSFGNEGCNGGLMTNAFEY 196          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 64/156 (41.03%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  222 EHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLN-RRLRL----PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            E   RF VFK N         +D      + KF+D+T  EFR  + G   +  R+    P           + +P   DWR  GAVT VKDQG CGSCW+FS   A+EG + + T +LVSLSEQ+LVDCD +         + GCNGGLM+ AFE+
Sbjct:   53 EKQKRFNVFKHNAMHVHNANKMDKPYKLKLNKFADMTNHEFRNTYSGSKVKHHRMFRGGPRGNGTFMYEKVDTVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD--------QNQGCNGGLMDYAFEF 200          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  318 FSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            F D+T  EFR+   G   +        +  +LP  ++PT  DWR+ G +T VKDQG CGSCW+FSATGALEG  F  TG+L+SL+EQ LVDC            + GCNGG M++ F Y
Sbjct:   23 FGDMTNEEFRQVMNGFQYQKHRKGKQFQERLLP--EIPTSVDWREKGYMTPVKDQGQCGSCWAFSATGALEGQMFWKTGKLISLNEQNLVDC-------SGPQGNEGCNGGFMDNPFRY 132          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 67/170 (39.41%), Postives = 95/170 (55.88%), Query Frame = 3
Query:  171 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            HF  +  +  K Y++ EE+ +R + F +NLR        + T   G+ +FSD++  E +R++L    +      A K+  L  T   P   DWR  G  VT VK+QG+CGSCW+FS TGALE A  ++TG+L  L+EQQLVDC    +       + GC GGL + AFEY
Sbjct:   34 HFQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSEPQ---NCSATKSNYLRGTGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEY 192          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 66/155 (42.58%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  222 EHDYRFRVFKANLRRAK*RQLLDPTAVH---GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTG-VKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            EH+ RFRVF  NL+                 G+ +F+DLT  EFR  +LG     R     +         LP   DWRD GAV   VK+QG CGSCW+FSA  A+EG + + TGELVSLSEQ+LV+C            +SGCNGG+M+ AF +
Sbjct:   84 EHERRFRVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNGEFRATYLGTTPAGRGRRVGEAYRHDGVEALPDSVDWRDKGAVVAPVKNQGQCGSCWAFSAVAAVEGINKIVTGELVSLSEQELVEC-------ARNGQNSGCNGGIMDDAFAF 231          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 66/170 (38.82%), Postives = 95/170 (55.88%), Query Frame = 3
Query:  171 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 674
            HF  +  +  K Y+ +E H +R +VF +N R+       + T   G+ +FSD++  E R ++L    +      A K   L  T   P   DWR  G  V+ VK+QG+CGSCW+FS TGALE A  ++TG+++SL+EQQLVDC    +       + GC GGL + AFEY
Sbjct:   34 HFKSWMVQHQKKYSLEEYH-HRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQ---NCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEY 192          
BLAST of FC875487 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 66/172 (38.37%), Postives = 91/172 (52.91%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK*RQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY--YSG 683
            F+ F  +  K Y    E   RFR+F  +L   +           G+ +F+D++  EF+   LG  +       A    +     LP   DWR+ G V+ VKDQG CGSCW+FS TG+LE A+  +TG+ VSLSEQQLVDC        +   + GC+GGL + AFEY  Y+G
Sbjct:   62 FARFAVRHGKRYGDAAEVQRRFRIFSESLELVRSTNRRGLPYRLGINRFADMSWEEFQASRLGAAQNCSATL-AGNHRMRDAAALPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDC-------ATAYNNFGCSGGLPSQAFEYIKYNG 225          
The following BLAST results are available for this feature:
BLAST of FC875487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CATH_RAT1.539e-2337.65Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
ANAN_ANACO1.539e-2333.53Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]
PAPA3_CARPA2.011e-2336.81Caricain OS=Carica papaya PE=1 SV=2[more]
CYSP3_DICDI2.626e-2339.88Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CYSEP_RICCO4.479e-2341.03Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CATL6_HUMAN4.479e-2346.22Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
CATH_BOVIN4.479e-2339.41Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CYSP1_ORYSJ7.640e-2342.58Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CATH_PIG7.640e-2338.82Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
ORYC_ORYSJ9.978e-2338.37Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404E03EF CTVClemen1 Citrus clementina cDNA clone C31404E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875487 ID=FC875487; Name=FC875487; organism=Citrus clementina; type=EST; length=721bp
GACTGAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGGCGACGA
TGCTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAACCTCCGCCGAGCAAAGTGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAA
GGCTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACTACTCAGGCTGGTGGGGTGAGCGAGA
GAGGACTACCCTACCTGGGAC
back to top