FC875492

Overview
NameFC875492
Unique NameFC875492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.754e-54
Identity = 105/182 (57.69%), Postives = 134/182 (73.63%), Query Frame = 1
Query:  187 AAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVAT-NNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A AD  MLQD CVADL++ +KVNG+PCK  A  +  DF+   LA   AT N++ GS VT ANV+ +PGLNTLGVS++RIDYAPGG+NPPH HPRA+E +FVLEG+L VGF TT   L+SK + KG+ FVFP+ L+HFQ+N    PASV+A F+SQL GTQ +  +LF S PP+ + +L K F
Sbjct:   20 ALADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAF 201          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.991e-54
Identity = 104/181 (57.46%), Postives = 135/181 (74.59%), Query Frame = 1
Query:  187 AAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A A  EMLQDVCVADL++ +KVNG+ CK     +  DF+   LA   ATN + GS VT ANV+ +PGLNTLG+S++RIDYAP G+NPPH HPRA+EI+FVLEGQL VGF TTA  L++K++ KG+ F FP+GL+HFQKN  N PASV+A F+SQL GTQ++  +LF + P   + +L K+F
Sbjct:   18 AMASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGALP---DDILAKSF 195          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.184e-48
Identity = 95/178 (53.37%), Postives = 119/178 (66.85%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            ++D + LQD CV DL +   +NGFPCK++ S  DFF   L  P+ T+   G  V+ ANV T PGLNTLG+S+  +++APGG+NPPH+HPRATE   V+EG + VGF TT N L SK +  GE FV PRGLVHFQ N G V A +I  FNSQL G+  +  TLF S P +   VLTKTF
Sbjct:   27 SSDSDPLQDFCVGDLKASPSINGFPCKSSVSASDFFFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTF 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.076e-47
Identity = 94/178 (52.81%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            ++D + LQD CV DL +   +NGFPCK+  S  DFF   L  P+ T+N  G TV  ANV T PGLNTLG+S+  ++ APGG+NPPH HPRATE+  V+EG + VGF +T N L SK +  GE FV PRGLVHFQ N G V A +I  FNSQL G   +  TLF S P +   VLT+ F
Sbjct:   27 SSDSDPLQDFCVGDLKASASINGFPCKSAVSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAF 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.076e-47
Identity = 104/184 (56.52%), Postives = 126/184 (68.48%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CVADL SP++VNGF CK   N S  DFF +  L KP  TNN  GS VT  NV  +PGLNTLG+S+AR+D+AP G+NPPHTHPRATEI  VLEG L VGF T+   N L+SK + KG+ FVFP GL+HFQ N N + PA  IA  +SQ  G   IA  +F S PP+++ +L K F
Sbjct:   24 ASDPSPLQDFCVADLNSPVRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAF 207          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.041e-47
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 1
Query:  190 AADPEMLQDVCVAD---LTSPIKVNGFPCK--ANFSEMDFFSDKLAKP--VATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAP-GGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLF-ASTPPVAEYVLTKTF 723
            A DP+MLQD+CVAD   L  P++VNGFPCK  AN +  DFF   L KP  V + N  GS VTAA V+ IPGLNTLGVS+AR+DYAP GG NPPH+HPRATEI+FV +G L+VGF        ++ L+++ + KG  FVFPRGL+H++++ G  PA  I+ F+SQL GTQ  A  LF +S+P V   VL + F
Sbjct:   27 AGDPDMLQDICVADYKSLQGPLRVNGFPCKPEANVTAEDFFFPGLGKPADVYSGNPMGSAVTAATVERIPGLNTLGVSMARVDYAPWGGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYERSVGEKPAVAISAFDSQLPGTQAAADALFGSSSPAVPTDVLARAF 218          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.114e-46
Identity = 100/183 (54.64%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVAD+ SP++VNGFPCK     +  DFF+  K   P +T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + N PA   +  NSQ  G   IA  +F S PP+++ VLTK F
Sbjct:   23 AFDPSPLQDFCVADMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGSKPPISDDVLTKAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.680e-46
Identity = 100/183 (54.64%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVAD+ SP++VNGFPCK   N +  DFF+  K   P  T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + N PA   +  +SQ  G   IA  +F STPP+++ VL K F
Sbjct:   23 AFDPSPLQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAF 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.149e-44
Identity = 103/185 (55.68%), Postives = 124/185 (67.03%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD----FFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A+DP  LQD CVAD+ SP++VNGF C  N  E++    F + KL  P  TN   GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP+GL+HFQ N N + PA  IA  +SQ  G   IA  +F S PP+++ VL K F
Sbjct:   22 ASDPSPLQDFCVADMHSPVRVNGFAC-LNPMEVNADHFFKAAKLDTPRKTNKV-GSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAF 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.787e-44
Identity = 98/183 (53.55%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP  LQD CVAD+ SP++VNGF CK   + S  DFF+  K   P  T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + + PA   +  +SQ  G   IA  +F S PP+++ VLTK F
Sbjct:   23 AYDPSPLQDFCVADMNSPVRVNGFACKNPMDVSSEDFFNAAKFDMPRNTFNKLGSNVTNLNVMEFPGLNTLGISLARIDYAPMGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGSQPPISDDVLTKAF 205          
The following BLAST results are available for this feature:
BLAST of FC875492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL23_ARATH1.754e-5457.69Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL25_ARATH2.991e-5457.46Probable germin-like protein subfamily 2 member 5 ... [more]
GLT2_ARATH4.184e-4853.37Germin-like protein subfamily T member 2 OS=Arabid... [more]
GLT1_ARATH2.076e-4752.81Germin-like protein subfamily T member 1 OS=Arabid... [more]
GL82_ORYSJ2.076e-4756.52Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL14_ORYSJ6.041e-4754.17Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]
GL84_ORYSJ5.114e-4654.64Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL83_ORYSJ6.680e-4654.64Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL85_ORYSJ2.149e-4455.68Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL812_ORYSJ4.787e-4453.55Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC31404E08EF CTVClemen1 Citrus clementina cDNA clone C31404E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875492 ID=FC875492; Name=FC875492; organism=Citrus clementina; type=EST; length=733bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGTAGCCACAAACAACACGTTTGGTTCAACAGT
GACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGGG
GACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGG
AATATGTATTGACTAAGACTTTCCCAGATGGTA
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