FC875506

Overview
NameFC875506
Unique NameFC875506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:13..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 7.222e-74
Identity = 133/221 (60.18%), Postives = 169/221 (76.47%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  TV+A+H+S+E +RRFYKNW             +++ D GKK ++     +KKY  V+R++AHTQ+R +  L+QKKAHLMEIQVNGGT+AEK+D+A    E+Q+PV+ VF +DEMID+I
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI 220          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.232e-73
Identity = 132/221 (59.73%), Postives = 166/221 (75.11%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            MSHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LTAF+ +KAGMTHIVR+V+KPGSK++KKE  EAVTI E           Y+ TPRG R   TVWA+HLSE+ R RFYKNW             +++ ++G+KSI+A L K+KKY S +RV+AHTQ++ MK  ++KKAH+MEIQ+NGGT+AEKVD+A    EKQ+PVD+VF +DEMID I
Sbjct:    1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCI 220          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 4.681e-73
Identity = 131/221 (59.28%), Postives = 168/221 (76.02%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  T++A+H+S+E +RRFYKNW             +++  +GKK ++     +KKY  V+RV+AHTQ+R +  L+QKKAHLME+QVNGGT+AEK+D+A    E+Q+PV  VF +DEMID+I
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVI 220          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.323e-72
Identity = 137/222 (61.71%), Postives = 167/222 (75.23%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC-XXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            MSHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++   LTAF+GYKAGMTH+VRD+EKPGSK+HKKE  EAVTIIE           YV+T +GL++  TVWAQHLS+  RRR YKNW              QYET+EGKKSI+A L+ IKK  SVVRV+AHTQ+ K+K L QKKAH++EIQVNGG+I EKV++A   FEK + V  VF ++E+ID+I
Sbjct:    1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVI 221          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.963e-72
Identity = 135/220 (61.36%), Postives = 167/220 (75.91%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDI 712
            MSHRK+E PRHGSLGFLPRKR+A  RG+VK+FPKD  SKP  LTAFLGYKAGMT +VRD+++PGSK+HK+E  EA T+++T          YV+TPRGLRSL TVWA+HLSEEVRRRFYKNW             +Y  D  +  ++ +L +IKKYASVVRVLAHTQI+K   L QKKAHL EIQVNGG++++KVD+A   FEK + VD+VF+KDEM+D+
Sbjct:    1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKNWYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTP-LAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDV 217          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.569e-71
Identity = 130/221 (58.82%), Postives = 163/221 (73.76%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAVTI+ET          YV TP+G R+L T+WA+HLSEE RRRFY NW             +++ ++GKK I+A   K+KKY S +RV+AHTQ++ ++  +QKKAHL+EIQVNGGTI +KVD+A    EKQ+ VD VF +DEMID I
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTI 220          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.723e-71
Identity = 129/221 (58.37%), Postives = 163/221 (73.76%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAV+IIET          Y+ TP+G R+L T+WA+HLSEE RRRFY NW             +++ ++GKK I+A   K+KKY S +RV+AHTQ++ ++  +QKKAHL+EIQ+NGGTI +KVD+A    EKQI VD VF +DEMID I
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTI 220          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 266.929 bits (681), Expect = 7.474e-71
Identity = 137/221 (61.99%), Postives = 164/221 (74.21%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            MSHRK+E PRHG LGFLPRKRAA  R +VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW             +Y  D     I+ +L +IKKYASVVRVL HTQIRK   L QKKAHL EIQ+NGG+I+EKVD+A   FEK + VD+VF+++EMID I
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAI 218          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.474e-71
Identity = 133/221 (60.18%), Postives = 167/221 (75.57%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            MSHRK+E PRHG LGFLPRKRAA  RG+VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAV++++T          Y++TPRGLRSL TVWA+HLS+E++RRFYKNW                  +G  +I+ +L +IKKYASVVRVLAHTQ+RK   L QKKAHL EIQ+NGG+++EKVD+A   FEK + VD+VF+++EMID+I
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAFTQVPPPSTAQDG-AAIERELARIKKYASVVRVLAHTQVRKTP-LVQKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVI 219          
BLAST of FC875506 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.709e-70
Identity = 134/221 (60.63%), Postives = 165/221 (74.66%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDII 715
            MSHRK+E PRHG LGFLPRKRAA  RG+VK+FPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW             +Y   +    I+ +L +IKKYA+VVRVL HTQ+RK   L QKKAHL EIQ+NGG+I+EKVD+A   FEK + VD+VF+++EMID I
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYA--QNGAEIERELARIKKYATVVRVLVHTQVRKTP-LVQKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAI 218          
The following BLAST results are available for this feature:
BLAST of FC875506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL3_MOUSE7.222e-7460.1860S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_TOXCA1.232e-7359.7360S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_BOVIN4.681e-7359.2860S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_DICDI2.323e-7261.7160S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_DEBHA3.963e-7261.3660S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_CAEEL2.569e-7158.8260S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CAEBR5.723e-7158.3760S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_YEAST7.474e-7161.9960S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_ASHGO7.474e-7160.1860S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_CANGA3.709e-7060.6360S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC31404F10EF CTVClemen1 Citrus clementina cDNA clone C31404F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875506 ID=FC875506; Name=FC875506; organism=Citrus clementina; type=EST; length=715bp
GCCAGCTCTAGAGCACAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGA
GAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTT
CTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCC
CAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACA
AGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAG
CTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCC
AATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTC
GCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGA
AGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATA
CTCAAAGCAGTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGC
TGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACT
CAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGA
AATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATG
GCTTCTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAAGATGAG
ATGATTGACATCATC
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