FC875519

Overview
NameFC875519
Unique NameFC875519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15255 contig Ccv1_Contig15255:32..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875519 vs. ExPASy Swiss-Prot
Match: YG2V_YEAST (Uncharacterized protein YGR110W OS=Saccharomyces cerevisiae GN=YGR110W PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 48/144 (33.33%), Postives = 70/144 (48.61%), Query Frame = 2 
Query:  353 DEPRFINTVTFDSKE------DSPTLIMVHGYGASQGFFFRNFD---ALASRFRVIAVDQLGCGGSSRPDFTCK----STEETEAWFIDSFEEWRKAKNLSN----FILLGHSLGGYVAAKYALQHPE--HVQHLILVGPAGFS 727
            DE  +IN      ++      D   L+ +HGYGA  GFF +NF+    L + + + A+D  G G SSRP F  +    +    + WF +    W   +NL N     I++ HSLG Y+ A Y  ++ E    + LIL  PAG S
Sbjct:  118 DEGNYINEFCIRPRKTSVPEADLKHLVFIHGYGAGLGFFIKNFEDIPLLDNEWCIHAIDLPGYGFSSRPKFPFEYPRDNIHSVQDWFHERIHTWFSKRNLLNRPEKNIVMAHSLGSYLMALYLQKYKESPSFKKLILCSPAGVS 261
The following BLAST results are available for this feature:
BLAST of FC875519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YG2V_YEAST1.836e-1133.33Uncharacterized protein YGR110W OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC31404G12EF CTVClemen1 Citrus clementina cDNA clone C31404G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875519 ID=FC875519; Name=FC875519; organism=Citrus clementina; type=EST; length=733bp
GCCGACATAATTATCGATAATTGATTCACCGGCACTGTTCCTGCTCAGCA
ATCGTTACCCAAATTGTATGAATCTGCGGGGGTCCAGCTCAATTCCGAAA
ATGGCAGAAGAAATTAGCAAGAGCGAGCTAAGATCCTCTGCTGCTGCCAC
ATCAACACCATCATCATCTACGACTGCAAAATCGAGATGGTCCTGGCCGT
CCGTCCTCCGTTGGATTCCCACTTCTAACAATCACATCATTGCCGCCGAA
AAGCGCCTCCTCTCTATAATCAAGACTCCATATGTTCAAGAACAAGTTAA
TATAGGTTCAAGTCCACCTGGGTCGAAAATCAGGTGGTTTCGTTCTTCAA
GCGATGAACCAAGGTTCATCAACACGGTTACTTTTGATAGCAAAGAGGAT
TCTCCCACTCTTATAATGGTTCATGGATATGGAGCATCCCAGGGCTTCTT
CTTTCGCAATTTTGATGCTCTTGCTAGTCGTTTCAGAGTCATTGCTGTTG
ATCAACTTGGTTGCGGTGGATCAAGCAGGCCTGACTTTACGTGCAAAAGC
ACAGAAGAAACTGAAGCATGGTTTATTGATTCCTTTGAGGAATGGCGCAA
AGCCAAAAACCTCAGCAACTTCATTTTACTTGGGCATTCTCTTGGAGGGT
ATGTTGCCGCTAAATATGCTCTNCAGCATCCCGAGCATGTCCAGCACTTG
ATTTTAGTTGGACCTGCTGGATTTTCAGCTCAT
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