FC875520

Overview
NameFC875520
Unique NameFC875520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10250 contig Ccv1_Contig10250:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 53/159 (33.33%), Postives = 85/159 (53.46%), Query Frame = 1
Query:  157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN--HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            GACGY  +      G  A G   ++KDG GC AC++++CK P  CSG+   V +TD N  H     F +S +AF A++ +G+   + K G + ++++RV C+Y +        E     +YLA+ V Y  G   +VA+D+    S  +  M  ++GA+W
Sbjct:   40 GACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKCKEPVECSGEPVLVKITDKNYEHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAVDIKPRDSDEFIPMKSSWGAIW 198          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQT--DFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN------WGYMSRNYGAVW 627
            + GACG+            + G   L+KDG GCG+C+++RC     CSG+   VI+TD+N+       F +S  AF  L+  G    +   G++D+E+ RVPCE+    +   VEE S  P Y AV V Y+ G  ++V +D+ +  +++      W  M  ++G++W
Sbjct:   74 NGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQSCSGRSETVIITDMNYYPVAPFHFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYS-NPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIW 239          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.631e-20
Identity = 59/188 (31.38%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  109 HQTKVAYFSQASALSS--GACGYGSLA-LSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-----LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPM 648
            H     ++  A    S  GACGYG+L  +      + A  P L+K G GCGAC+++RC + ++CS +   VI+TD     +    +T F +S  AF  L+  G G  +   G + V Y+R  C+Y  +N+A  V E S    +L++ V ++ G  ++ +M + Q  S+ W  M   +GA W  +  P+
Sbjct:   46 HPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCLDASICSRRAVTVIVTDECPGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGS-TTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPL 232          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN------WGYMSRNYGAVW 627
            + GACG+ ++         + G   ++KDG GCG+C+Q+RC     CSG    VI+TD+N+    +  F +S  AF A++  G    +   G++D++++RVPC Y    +   VEE S  P Y AV V Y+    ++V +D+ +  S+       W  M  ++G++W
Sbjct:   63 NGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPSCSGNIETVIITDMNYYPVARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGS-NPVYFAVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIW 228          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.199e-20
Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  157 GACGYGSLALSFNGGHLAAGV--PSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL---NHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            GACGYG+L +     H   G   P L+K+G GCGAC+++RC + ++CS +   VI+TD         T F +S   F  L+  G+   +   G++ V Y+R  C+Y+ +N+A  V E S    +L++ V ++ G+ ++ +M + Q G+  W  M   +GA W
Sbjct:   55 GACGYGTL-VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGS-TDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 214          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.199e-20
Identity = 55/166 (33.13%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN-----WGYMSRNYGAVW 627
            + GACG+ +          + G   L++DG GCGAC+Q+RC N   CSG+   VI+TD+N+    +  F +S  AF A++  G    +   G++D++++RVPC ++   +   VE  S  P YLAV V +      +V +DV +   S      W  M R++G++W
Sbjct:   50 NGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPSCSGQPRTVIITDMNYYPVARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGS-NPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIW 214          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  157 GACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH---SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQ-VGSSNWGYMSRNYGAVW 627
            GACGYG+ +A       ++AG PSL+K G GCGAC+Q++C + + CS     V++TD           F +S  AF A++  G+   +  +G + + YK+V C Y  + +  +V++ S   N  AV V Y  G  E+  +++ Q + S  W  MS+++GAVW
Sbjct:   66 GACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECPGCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGS-NANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVW 226          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB5_ARATH (Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 56/166 (33.73%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  151 SSGACGYG-SLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL---NHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636
            + GACGYG ++A       ++AG PSL+KDG GCGAC++++C +P LC+ K  +V+++D           F +S +AF AL+ +GKG  +  LG + V YKR  C++    +A+ V ++   P Y++  V +  G      ++V   G   +  M     AVW  S
Sbjct:   51 TGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLKCDHP-LCTKKPIKVMISDECPGCTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCKHPKTMIAIHV-DAGANPYYMSFAVKFANGDGNFACIEVQPAG-GQYMKMEEMRSAVWRLS 213          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.951e-19
Identity = 54/175 (30.86%), Postives = 87/175 (49.71%), Query Frame = 1
Query:  157 GACGYG-SLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN--------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVG---SSNWGYMSRNYGAVW 627
            GACGY  ++        +AAG P +Y  G GCG+C+++ C     CSG    V++TD                 +    F +S  AF A++  G+   +   G++ ++Y RV CE+    L   V +S   PNYLA+ V Y    +++ A+D+  +G   S +W  M +++GAVW
Sbjct:   58 GACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTF-VVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVW 231          
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 53/165 (32.12%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  151 SSGACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-----LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627
            + GACGYGS +A       ++AG PSL+ +G GCG C+Q+ C     CSG    V +TD        S      +S +A  AL+  G+   +   GV+ V YKR  C Y+  N+  R+ ++   P Y++  V Y+ G  ++  +++   G S +  M     AVW
Sbjct:   50 TGGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRM-DAGANPYYISFVVEYENGDGDLSNVEIQPAGGS-FISMQEMRSAVW 212          
The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
MPAC1_CYNDA7.322e-2133.33Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
EXPB4_ORYSJ1.249e-2032.34Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB16_ORYSJ1.631e-2031.38Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB6_ORYSJ2.783e-2031.74Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ARATH6.199e-2033.33Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXPB2_ORYSJ6.199e-2033.13Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB2_ARATH8.096e-2034.57Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
EXPB5_ARATH6.854e-1933.73Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 ... [more]
EXB12_ORYSJ8.951e-1930.86Expansin-B12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB4_ARATH2.438e-1632.12Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC31404H01EF CTVClemen1 Citrus clementina cDNA clone C31404H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bp
GGTCAAATTTTTGCATTTGTATCCTATCTTTCTCATTAAACAATGGTTTT
GTTTCTTTGCTTTCTCTTCTTTCTCTTCTCTTCTGCTACTGCTTGTGATC
GCTGTGTGCACCAAACCAAGGTTGCTTATTTCTCCCAAGCCTCTGCACTT
TCATCCGGGGCATGTGGATATGGTTCATTAGCATTAAGCTTCAATGGTGG
ACACCTTGCTGCTGGTGTTCCTTCCCTTTACAAAGATGGAGCTGGTTGTG
GTGCATGCTTTCAAATGAGATGCAAGAACCCAACTCTGTGTAGCGGCAAA
GGAACCAGAGTGATTCTGACTGATCTCAATCACAGCAACCAAACAGATTT
TGTTATCAGCAGCAGAGCTTTCATGGCCTTATCCAACCAGGGCAAGGGCC
AAGACATTTTAAAACTTGGAGTTGTCGATGTAGAATACAAAAGGGTTCCA
TGTGAATATAAAAACCAGAACTTGGCTGTGCGTGTGGAAGAATCAAGTCA
AAAACCAAATTATTTAGCAGTTAAAGTGTTGTATCAGGGTGGTCAAACAG
AAATGGTAGCAATGGATGTAGCTCAGGTTGGTTCTTCAAACTGGGGTTAC
ATGAGCAGAAATTATGGGGCAGTTTGGGATACAAGTAGAGTGCCAATGGG
GCATTGCAGTTCAGATTTGTGGTACATCANGCTATGATGGCAAGTGGATT
TGGGCAAAAAATGTCTTCAGCTGATTGG
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