FC875520
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21 Identity = 53/159 (33.33%), Postives = 85/159 (53.46%), Query Frame = 1 Query: 157 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN--HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627 GACGY + G A G ++KDG GC AC++++CK P CSG+ V +TD N H F +S +AF A++ +G+ + K G + ++++RV C+Y + E +YLA+ V Y G +VA+D+ S + M ++GA+W Sbjct: 40 GACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKCKEPVECSGEPVLVKITDKNYEHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAVDIKPRDSDEFIPMKSSWGAIW 198
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20 Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 1 Query: 151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQT--DFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN------WGYMSRNYGAVW 627 + GACG+ + G L+KDG GCG+C+++RC CSG+ VI+TD+N+ F +S AF L+ G + G++D+E+ RVPCE+ + VEE S P Y AV V Y+ G ++V +D+ + +++ W M ++G++W Sbjct: 74 NGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQSCSGRSETVIITDMNYYPVAPFHFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYS-NPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIW 239
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.631e-20 Identity = 59/188 (31.38%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 109 HQTKVAYFSQASALSS--GACGYGSLA-LSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-----LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPM 648 H ++ A S GACGYG+L + + A P L+K G GCGAC+++RC + ++CS + VI+TD + +T F +S AF L+ G G + G + V Y+R C+Y +N+A V E S +L++ V ++ G ++ +M + Q S+ W M +GA W + P+ Sbjct: 46 HPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCLDASICSRRAVTVIVTDECPGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGS-TTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPL 232
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20 Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = 1 Query: 151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN------WGYMSRNYGAVW 627 + GACG+ ++ + G ++KDG GCG+C+Q+RC CSG VI+TD+N+ + F +S AF A++ G + G++D++++RVPC Y + VEE S P Y AV V Y+ ++V +D+ + S+ W M ++G++W Sbjct: 63 NGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPSCSGNIETVIITDMNYYPVARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGS-NPVYFAVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIW 228
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.199e-20 Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 157 GACGYGSLALSFNGGHLAAGV--PSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL---NHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627 GACGYG+L + H G P L+K+G GCGAC+++RC + ++CS + VI+TD T F +S F L+ G+ + G++ V Y+R C+Y+ +N+A V E S +L++ V ++ G+ ++ +M + Q G+ W M +GA W Sbjct: 55 GACGYGTL-VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGS-TDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 214
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.199e-20 Identity = 55/166 (33.13%), Postives = 89/166 (53.61%), Query Frame = 1 Query: 151 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN-----WGYMSRNYGAVW 627 + GACG+ + + G L++DG GCGAC+Q+RC N CSG+ VI+TD+N+ + F +S AF A++ G + G++D++++RVPC ++ + VE S P YLAV V + +V +DV + S W M R++G++W Sbjct: 50 NGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPSCSGQPRTVIITDMNYYPVARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGS-NPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIW 214
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20 Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 1 Query: 157 GACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH---SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQ-VGSSNWGYMSRNYGAVW 627 GACGYG+ +A ++AG PSL+K G GCGAC+Q++C + + CS V++TD F +S AF A++ G+ + +G + + YK+V C Y + + +V++ S N AV V Y G E+ +++ Q + S W MS+++GAVW Sbjct: 66 GACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECPGCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGS-NANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVW 226
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB5_ARATH (Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19 Identity = 56/166 (33.73%), Postives = 90/166 (54.22%), Query Frame = 1 Query: 151 SSGACGYG-SLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL---NHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS 636 + GACGYG ++A ++AG PSL+KDG GCGAC++++C +P LC+ K +V+++D F +S +AF AL+ +GKG + LG + V YKR C++ +A+ V ++ P Y++ V + G ++V G + M AVW S Sbjct: 51 TGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLKCDHP-LCTKKPIKVMISDECPGCTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCKHPKTMIAIHV-DAGANPYYMSFAVKFANGDGNFACIEVQPAG-GQYMKMEEMRSAVWRLS 213
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.951e-19 Identity = 54/175 (30.86%), Postives = 87/175 (49.71%), Query Frame = 1 Query: 157 GACGYG-SLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN--------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVG---SSNWGYMSRNYGAVW 627 GACGY ++ +AAG P +Y G GCG+C+++ C CSG V++TD + F +S AF A++ G+ + G++ ++Y RV CE+ L V +S PNYLA+ V Y +++ A+D+ +G S +W M +++GAVW Sbjct: 58 GACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTF-VVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVW 231
BLAST of FC875520 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16 Identity = 53/165 (32.12%), Postives = 82/165 (49.70%), Query Frame = 1 Query: 151 SSGACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-----LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW 627 + GACGYGS +A ++AG PSL+ +G GCG C+Q+ C CSG V +TD S +S +A AL+ G+ + GV+ V YKR C Y+ N+ R+ ++ P Y++ V Y+ G ++ +++ G S + M AVW Sbjct: 50 TGGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRM-DAGANPYYISFVVEYENGDGDLSNVEIQPAGGS-FISMQEMRSAVW 212 The following BLAST results are available for this feature:
BLAST of FC875520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 53
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875520 ID=FC875520; Name=FC875520; organism=Citrus clementina; type=EST; length=728bpback to top |