FC875547

Overview
NameFC875547
Unique NameFC875547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875547_ssr24 microsatellite FC875547_ssr24:24..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3288 contig Ccv1_Contig3288:238..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACC3 (ATP synthase subunit delta OS=Bacillus cereus (strain 03BB102) GN=atpH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ DI  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACC0 (ATP synthase subunit delta OS=Bacillus cereus (strain AH820) GN=atpH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ DI  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACAN (ATP synthase subunit delta OS=Bacillus anthracis GN=atpH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ DI  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACAH (ATP synthase subunit delta OS=Bacillus thuringiensis (strain Al Hakam) GN=atpH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ DI  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACAC (ATP synthase subunit delta OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=atpH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ DI  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACAA (ATP synthase subunit delta OS=Bacillus anthracis (strain A0248) GN=atpH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ DI  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_NOSP7 (ATP synthase subunit delta OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 42/142 (29.58%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  261 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIF-SEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            +A VA  YA AL+ +A++ N  E    D      +  ++KQ+H FF NP I  E K+ ++ +I    +  P   NFL IL+D +R+  ++ I +++  +  ++  T +A V S V L       I ++V  ++ A+ V ++T
Sbjct:    7 AAEVAQPYAQALLSIAQSKNLTEEFGEDARTFLGLLRADKQLHNFFSNPFIQAENKKALIKQILGEGS-NPYLRNFLLILVDKRRIAFLESIFQQYLALLRQLNQTVLAEVISAVPLTEAQQQAIIQKVIAISNARQVELET 147          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACC2 (ATP synthase subunit delta OS=Bacillus cereus (strain G9842) GN=atpH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ +I  E+  + N+  N   A V S+  L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYVKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILPEIADEYVVLANEERNVADATVYSIRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_SYNP2 (ATP synthase subunit delta OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=atpH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 44/144 (30.56%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  249 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRI 677
            G  M A V   YA AL+ LA+  N +E+ + +   +  +F E  +   F +NP +  E K+ ++  +C    +     NFL +L+D +R+  ++ I +EF  +  K+ N  +A V+S   L ++  A IA QV+++TGA  V +
Sbjct:    3 GNTMIAQVVEPYAGALMTLAQETNKVEAFAENCRALLSLFQESAEFRSFVMNPLVKAEDKKGVLQGVCGQD-VDTYFLNFLFLLVDRRRIVFLEGICQEFVALQRKLNNIVLADVTSAQPLTTDQEAAIADQVKQMTGANAVEL 145          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_GALSU (ATP synthase subunit delta, chloroplastic OS=Galdieria sulphuraria GN=atpD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 39/138 (28.26%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIK 680
            +A  YA  L ++A   N+L   +  +  I+ +  +  + + F VNP I  + K+  + +I  ++ L  +T NFL ILI+ +R+    DIV +F  ++NK TNT +  ++SV+ L  +    +  +++++T A  +++K
Sbjct:    7 IAKVYAEGLFEIANTKNSLAEINEQLNSIKSVLKQMPEFYYFLVNPLISQQIKKNTI-KIVFNNNLDKITLNFLLILIERRRIIYFYDIVDQFILIWNKATNTSVVEIASVISLTEKQQQYLINKLKEITKANYIKLK 143          
The following BLAST results are available for this feature:
BLAST of FC875547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ATPD_BACC31.169e-1231.91ATP synthase subunit delta OS=Bacillus cereus (str... [more]
ATPD_BACC01.169e-1231.91ATP synthase subunit delta OS=Bacillus cereus (str... [more]
ATPD_BACAN1.169e-1231.91ATP synthase subunit delta OS=Bacillus anthracis G... [more]
ATPD_BACAH1.169e-1231.91ATP synthase subunit delta OS=Bacillus thuringiens... [more]
ATPD_BACAC1.169e-1231.91ATP synthase subunit delta OS=Bacillus anthracis (... [more]
ATPD_BACAA1.169e-1231.91ATP synthase subunit delta OS=Bacillus anthracis (... [more]
ATPD_NOSP74.441e-1229.58ATP synthase subunit delta OS=Nostoc punctiforme (... [more]
ATPD_BACC24.441e-1231.21ATP synthase subunit delta OS=Bacillus cereus (str... [more]
ATPD_SYNP25.801e-1230.56ATP synthase subunit delta OS=Synechococcus sp. (s... [more]
ATPD_GALSU9.894e-1228.26ATP synthase subunit delta, chloroplastic OS=Galdi... [more]

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Properties
Property NameValue
Genbank descriptionC31405B04EF CTVClemen1 Citrus clementina cDNA clone C31405B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875547 ID=FC875547; Name=FC875547; organism=Citrus clementina; type=EST; length=699bp
GAATCAATCCGTTCTTTGATTGACTCTCTCTCTCTCTGGCTCTTTCTCTG
TGTGCAGCAGAAGCAGCAGCCTCAGCCTCAGCCGCTGCCTCAGCATCAGC
ATCGGCGTTCTCATCGCGAAAAATGGTGTCTCTTCAGCAAACCGCAACCC
TCTCACTCCAATCAAACCTCTTCCCCTCCGGCCGCGCGGCCTCTCGAAAC
CCATTATCCGCCACCATCCCCTCCGGCCCACGCCGGCGCGGCGCCCACGG
AATCAGAATGTCAGCCACAGTGGCGACCAGCTACGCCATCGCGCTGGTGG
ACTTGGCGAAAGCGAACAACACCCTCGAGTCCACGAGCGCCGACGTGGAA
AAGATCGAGAAAATCTTCAGCGAGAAACAAATCCATGAGTTCTTCGTGAA
CCCCACCATCGATATCGAGAAGAAAAGAGAGATGGTGGACGAGATATGCA
AGTCGTCGGCGCTGCAGCCGCTGACCGGGAATTTCTTGAACATACTGATC
GACGCGAAGAGGGTGGACGTGGTGAAGGACATAGTGAAGGAGTTCGAGGA
GGTGTATAATAAGATGACGAATACGGAGATGGCGGTGGTGAGCTCGGTGG
TGAAGCTGGAGTCGGAGCATTTGGCTCAGATAGCGAAGCAAGTCCAGAAG
TTGACTGGGGCCAAGAATGTGAGGATAAAGACCGTGATGACCCGAGCTT
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