FC875549

Overview
NameFC875549
Unique NameFC875549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10257 contig Ccv1_Contig10257:1..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_BOVIN (Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.622e-31
Identity = 79/211 (37.44%), Postives = 128/211 (60.66%), Query Frame = 2
Query:  113 DHLFNLRNNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGRLFAAC 739
            D LF+++N FY+G+YQ  IN +       P+  VERD  +YR+Y+A   Y +V+ EI  S+A  LQAV++ A YL+S   +++ ++ L   +S     +N T  L+A  ++ ++++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ  DED TLTQLA AW++LA    + +     F+ + +  S T L+LNG+  AAC
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ--AAC 225          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_DICDI (Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.620e-25
Identity = 75/218 (34.40%), Postives = 121/218 (55.50%), Query Frame = 2
Query:  113 DHLFNLRNNFYLGAYQAAINNSDLTN---LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAAT----PLQAVKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQ-IDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGRLFAA 736
            D LF  +N FYLG YQ+ IN  +  +   +      E D  +YR YIA G+Y LV+ E   +  +     +  ++LLA YLS PD N+E T+ ++ +W+SD  +  N  L++I   ++ +E+ Y+EAL+  N    +E  ++ +QIFLK+ R D A++    M++ ID D T   L+ AW+N+     + +  +SSF  + E    T L+LNG+   A
Sbjct:    4 DILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETKNNRGSGEDPTIAGLQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFNEQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAWINIYNGEEKLKSALSSFEEMAERYGPTPLLLNGQAVCA 221          
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_CAEEL (Coatomer subunit epsilon OS=Caenorhabditis elegans GN=F45G2.4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.600e-16
Identity = 57/173 (32.95%), Postives = 99/173 (57.23%), Query Frame = 2
Query:  113 DHLFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESA-ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNE-ALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA 622
            D LF++RN F+LG+YQ+ I  +   ++   ++  E+D  +YRSYIA G   + + EI  +  +  L AV+  A + ++P  K+  ++ ++E ++   I S +   L A I  ++E D ++ A +  +    +E  A  V I +KM++   A  +++ M QIDED TL+QLANA
Sbjct:    3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATI--LNEADLSQDAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANA 173          
The following BLAST results are available for this feature:
BLAST of FC875549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPE_BOVIN1.622e-3137.44Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=... [more]
COPE_DICDI8.620e-2534.40Coatomer subunit epsilon OS=Dictyostelium discoide... [more]
COPE_CAEEL5.600e-1632.95Coatomer subunit epsilon OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionC31405B06EF CTVClemen1 Citrus clementina cDNA clone C31405B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875549 ID=FC875549; Name=FC875549; organism=Citrus clementina; type=EST; length=741bp
GAAAAGGTTTCAGTCTGCGCGTTGGAGTTGAAGAAGGGATCCAATCTAAA
TCAAAGAAGCAATCGATCAAGAAGCGAAAAAGGAATAAAGAATGGCAGCG
GCAGCAGCACCAGATCACTTGTTCAATCTGAGAAACAACTTCTACTTGGG
GGCGTATCAGGCCGCTATCAACAACAGCGACCTCACCAATCTTCCACCAG
ACGACGCCGTTGAGCGTGACTGCCTCGTCTACCGCTCTTACATTGCCCTT
GGCAGTTACCAGCTTGTGATCAGTGAGATCGATGAGTCGGCTGCTACTCC
TCTCCAAGCCGTGAAGTTGCTTGCTCTCTATCTCTCTAGCCCTGACAACA
AGGAATCAACAATTTCAAGTTTAAAAGAGTGGTTGTCAGATCCAGCCATT
GGGAGCAATGTGACATTACGCTTGATTGCTGGTATCGTATTCATGCATGA
AGAGGATTATAATGAGGCACTCAAACACACCAATGCTGGAGGGACCATGG
AATTACATGCATTGAATGTCCAAATATTCCTTAAGATGCACAGGTCTGAC
TATGCAGAGAGACAGCTGAGGGCCATGCAACAGATTGATGAGGACCACAC
CCTAACTCAACTCGCAAATGCTTGGTTGAATTTGGCAGTGGTGGTTCCCA
GATACAGGAAGCATATCTCATCTTTCAGATTTCTCTGAGAAGTATCCATG
ACAGGGTTGATCTTGAATGGAAGGCTGTTTGCTGCATGCAT
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