FC875549
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_BOVIN (Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3) HSP 1 Score: 136.346 bits (342), Expect = 1.622e-31 Identity = 79/211 (37.44%), Postives = 128/211 (60.66%), Query Frame = 2 Query: 113 DHLFNLRNNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGRLFAAC 739 D LF+++N FY+G+YQ IN + P+ VERD +YR+Y+A Y +V+ EI S+A LQAV++ A YL+S +++ ++ L +S +N T L+A ++ ++++ + AL+ + G ++E A+ VQI LK+ R D A ++L+ MQ DED TLTQLA AW++LA + + F+ + + S T L+LNG+ AAC Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ--AAC 225
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_DICDI (Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.620e-25 Identity = 75/218 (34.40%), Postives = 121/218 (55.50%), Query Frame = 2 Query: 113 DHLFNLRNNFYLGAYQAAINNSDLTN---LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAAT----PLQAVKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQ-IDEDHTLTQLANAWLNLAVVVPRYRKHISSFRFL*E-VSMTGLILNGRLFAA 736 D LF +N FYLG YQ+ IN + + + E D +YR YIA G+Y LV+ E + + + ++LLA YLS PD N+E T+ ++ +W+SD + N L++I ++ +E+ Y+EAL+ N +E ++ +QIFLK+ R D A++ M++ ID D T L+ AW+N+ + + +SSF + E T L+LNG+ A Sbjct: 4 DILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETKNNRGSGEDPTIAGLQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFNEQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAWINIYNGEEKLKSALSSFEEMAERYGPTPLLLNGQAVCA 221
BLAST of FC875549 vs. ExPASy Swiss-Prot
Match: COPE_CAEEL (Coatomer subunit epsilon OS=Caenorhabditis elegans GN=F45G2.4 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.600e-16 Identity = 57/173 (32.95%), Postives = 99/173 (57.23%), Query Frame = 2 Query: 113 DHLFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESA-ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNE-ALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANA 622 D LF++RN F+LG+YQ+ I + ++ ++ E+D +YRSYIA G + + EI + + L AV+ A + ++P K+ ++ ++E ++ I S + L A I ++E D ++ A + + +E A V I +KM++ A +++ M QIDED TL+QLANA Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATI--LNEADLSQDAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANA 173 The following BLAST results are available for this feature:
BLAST of FC875549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875549 ID=FC875549; Name=FC875549; organism=Citrus clementina; type=EST; length=741bpback to top |