FC875552

Overview
NameFC875552
Unique NameFC875552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.789e-69
Identity = 129/214 (60.28%), Postives = 157/214 (73.36%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M  VK  K+KAYFKR+QVK KRRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKDI+AQ+  + I GD V+A+AYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG+++F            +PHS+ RF GF ++ K  +AE HR  I G HVA YMS L E++
Sbjct:    1 MGLVKVIKNKAYFKRYQVKLKRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEED 214          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 261.151 bits (666), Expect = 3.986e-69
Identity = 130/215 (60.47%), Postives = 158/215 (73.49%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAH+LP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHKLPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_BOVIN (60S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=2 SV=3)

HSP 1 Score: 260.766 bits (665), Expect = 5.205e-69
Identity = 130/215 (60.47%), Postives = 157/215 (73.02%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+  AEVHRK+I G +VA YM  L+E++
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLIEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.798e-69
Identity = 126/214 (58.88%), Postives = 159/214 (74.30%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M  VK  K+KAYFKR+QVK +RRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKD++AQ+  + I GD V+A+AY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG+++F            +PHS+ RF GF ++ K+ +AE HR  I G HVA YM+ L E++
Sbjct:    1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEED 214          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 8.879e-69
Identity = 128/215 (59.53%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D     F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ + EVHRK+I+  +VA YM  LME++
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_RAT (60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 259.61 bits (662), Expect = 1.160e-68
Identity = 129/215 (60.00%), Postives = 157/215 (73.02%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QV+++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++
Sbjct:    1 MGFVKVVKNKAYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.160e-68
Identity = 127/215 (59.07%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D     F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ + EVHRK+I+  ++A YM  LME++
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLMEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 258.07 bits (658), Expect = 3.374e-68
Identity = 129/215 (60.00%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+KAYFKR+QV+++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G +Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++
Sbjct:    1 MGFVKVVKNKAYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.407e-68
Identity = 130/215 (60.47%), Postives = 157/215 (73.02%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+K YFKR+QVK+KRRREGKTDY AR RLI QDKNKY+TPKYR +VRF+N+DI  Q+  + I GD ++ AAY+HELP+YG++VGLTNYAAAYCTGLL+ARR+LK L +D  YEG  EA GE+Y VEPAD     FR  LDVGL+KT+TG RVF            IPHS KRF G+  + K+  AE HRK+I G HVA YM  L E++
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYDTPKYRLIVRFSNRDITCQVAHSRIEGDKIVCAAYSHELPKYGVKVGLTNYAAAYCTGLLVARRLLKKLGLDRLYEGLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRFPGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.407e-68
Identity = 128/215 (59.53%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+K YFKR+QV+++RRREGKTDY AR RLI QDKNKYNTPKYR +VR +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG R+F            IPHS KRF G+S + K  +AEVHR +I+G HVA YM TL E++
Sbjct:    1 MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKYRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYTGCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEVHRAHIFGQHVADYMRTLEEED 215          
The following BLAST results are available for this feature:
BLAST of FC875552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL5_CAEBR1.789e-6960.2860S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_MACFA3.986e-6960.4760S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_BOVIN5.205e-6960.4760S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=... [more]
RL5_CAEEL6.798e-6958.8860S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5A_XENLA8.879e-6959.5360S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5_RAT1.160e-6860.0060S ribosomal protein L5 OS=Rattus norvegicus GN=R... [more]
RL5B_XENLA1.160e-6859.0760S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5_MOUSE3.374e-6860.0060S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]
RL5_TOXCI4.407e-6860.4760S ribosomal protein L5 OS=Toxoptera citricida GN... [more]
RL5_AEDAE4.407e-6859.5360S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405B10EF CTVClemen1 Citrus clementina cDNA clone C31405B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875552 ID=FC875552; Name=FC875552; organism=Citrus clementina; type=EST; length=702bp
GACTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCTCTTACAATTCGAAA
GTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAA
GCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACA
GAGCTAGAATTCGCCTGATTAATCAGGACAAGAATAAGTACAACACACCC
AAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGAT
AGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCC
ATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCA
GCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGA
AATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACT
CTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTT
GGGCTCATCAAAACAACAACTGGAAACCGTGTGTTTGGTGCTCTGAAGGG
AGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCTG
GTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTAT
ATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATGA
GC
back to top