FC875552

Overview
NameFC875552
Unique NameFC875552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.755e-68
Identity = 128/215 (59.53%), Postives = 158/215 (73.49%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+K YFKR+QVK+KRRREGKTDY AR RLI QDKNKYNTPKYR VVRF+N+DI  Q+  + I GD +L AAYAHELP+YG++VGLTNYAAAYCTGLLLAR++L  L +D  Y G+ E TGE+++V+P  D    FR  LDVGL++TTTG RVF            I HS KRF GF  + K+ +A+VHR++I+G HVA YM  L E++
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.817e-68
Identity = 132/218 (60.55%), Postives = 157/218 (72.02%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT----RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            MAF K  K+ AY+ RFQ KYKRRREGKTDY AR RLI Q KNKYN PKYR VVRFTN+DII QIVS+ I GD V A+AY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D+ ++G  EA GE    E A+T    RRPF+A LDVGL +T+TG RVF            IPHS+ RF G+  + ++LDAE  +KYI+GGHVA YM TL +D+
Sbjct:    1 MAFHKLVKNSAYYSRFQTKYKRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIILQIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDD 218          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.674e-67
Identity = 129/215 (60.00%), Postives = 155/215 (72.09%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+K YFKR+QVK++RRREGKTDY AR RL  QDKNKYNTPKYR +VR +NKDI  QI  A I GD V+ AAY+HELP+YG++VGLTNYAAAYCTGLL+ARRVL  L +D  Y G  E TGE+++VEP D     FR  LDVGL +TTTG RVF            IPHS KRF G+S + K  +A+VHR +I+G HVA YM +L E++
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 2.856e-67
Identity = 127/215 (59.07%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+K YFKR+QV+++RRREGKTDY AR RLI QDKNKYNTPK+R +VR +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG RVF            IPHS KRF G+S + K  +AE+HR +I+G HVA YM TL E++
Sbjct:    1 MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEED 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.872e-67
Identity = 125/215 (58.14%), Postives = 158/215 (73.49%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M +VK  K+  YF R+QVKY+RRR+GKTDYRAR+RL+ QDKNKYNT KYR VVRF+NK++  QIV + I GD V+AAAY+ ELP YGL+VGLTNY+AAYC GLL+ARR+L  L + D Y+G  E  GEDY+VEP  D  +PF  LLD GL +T+TG++VF            IPH++KRF G++   K+LD EV +KYIYGGHVA Y  T+ E+E
Sbjct:    1 MGYVKVVKTSPYFSRYQVKYRRRRQGKTDYRARLRLVRQDKNKYNTHKYRLVVRFSNKNVTCQIVYSTIQGDVVMAAAYSKELPNYGLKVGLTNYSAAYCVGLLVARRILTKLNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEEE 213          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.872e-67
Identity = 124/215 (57.67%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+K YFKR+QVK+KRRREGKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I GD ++ AAY+HELPRYG++VGLTNYAAAY TGLLLARR+L+ L +D  Y G  + TG++Y+VEP D     FR  LDVGL +TTTG RVF            +PHS KRF G+  + K+ +AEVHR +I+G HVA YM +L +D+
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDD 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.363e-67
Identity = 125/215 (58.14%), Postives = 154/215 (71.63%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M FVK  K+K YFKRFQVKYKRRREGKTDY AR RL  QDK+KYNTPKYR +VR +NKDI  QI  + I GD ++ AAY+HELP+YG++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE  D     FR  LD GL++TTTG R+F            IPHS KRF G+  + K  +A+VHR++I+  H+A YM TL E+E
Sbjct:    1 MGFVKVVKNKQYFKRFQVKYKRRREGKTDYYARKRLTVQDKSKYNTPKYRLIVRLSNKDITCQIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENE 215          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.778e-65
Identity = 127/218 (58.26%), Postives = 158/218 (72.48%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGK---QLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M F++  K+KAYF+RFQVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +I QIVS+ +VGD V A+A + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D  RRPF+ALLDVG+   TTGNRVF            +PHS+KRF G+S D +     DA+ HR  I+G HVA YM  L E++
Sbjct:    1 MTFLRVVKNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEEDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGSYDAQAHRDRIFGTHVANYMEYLKEED 218          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.016e-64
Identity = 127/218 (58.26%), Postives = 158/218 (72.48%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQ---LDAEVHRKYIYGGHVAAYMSTLMEDE 701
            M F++  K+KAYF+RFQVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +I QIVS+ +VGD V A+A + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D  RRPF+ALLDVG+   TTGNRVF            +PHS+KRF G+S D +     DA+ HR  I+G HVA YM  L E++
Sbjct:    1 MTFLRVVKNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEED 218          
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.860e-64
Identity = 127/219 (57.99%), Postives = 160/219 (73.06%), Query Frame = 3
Query:   60 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSK--DG--KQLDAEVHRKYIYGGHVAAYMSTLMEDE 701
            MAFVKA K+KAYFKRFQVKY+RRREGKTDY AR RLI QDKNKYN PKYRFVVR TN  ++ Q++ A + GD ++ +A + EL RYG++VGLTNY+AAY TGLLLARR+LK   + DE++G  + +GE+Y +E  ++ RRPF+ +LDVG++ TT GNRVF            IPHS+KRF GF+K  DG     + EVHR  IYG HVA YM TL E++
Sbjct:    1 MAFVKAIKNKAYFKRFQVKYRRRREGKTDYAARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEED 219          
The following BLAST results are available for this feature:
BLAST of FC875552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL5_HELAN5.755e-6859.5360S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5_NEUCR9.817e-6860.5560S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_DROME1.674e-6760.0060S ribosomal protein L5 OS=Drosophila melanogaste... [more]
RL5_ANOGA2.856e-6759.0760S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_DUNSA4.872e-6758.1460S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_BOMMO4.872e-6757.6760S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_LYSTE6.363e-6758.1460S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_THEPA7.778e-6558.2660S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_THEAN1.016e-6458.2660S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5_EIMTE3.860e-6457.9960S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionC31405B10EF CTVClemen1 Citrus clementina cDNA clone C31405B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875552 ID=FC875552; Name=FC875552; organism=Citrus clementina; type=EST; length=702bp
GACTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCTCTTACAATTCGAAA
GTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAA
GCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACA
GAGCTAGAATTCGCCTGATTAATCAGGACAAGAATAAGTACAACACACCC
AAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGAT
AGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCC
ATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCA
GCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGA
AATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACT
CTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTT
GGGCTCATCAAAACAACAACTGGAAACCGTGTGTTTGGTGCTCTGAAGGG
AGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCTG
GTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTAT
ATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATGA
GC
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