FC875552
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13 Identity = 56/192 (29.17%), Postives = 81/192 (42.19%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 677 R++V +RRRE +TDY R+RL+ K R V R +N+ + AQ+++ GD AA + L YG E N +AY TG L R ++ G D A+LD+GL T GN+VF IPH++ A +S++ G H+AAY Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRN-------------RGEHIAAY 151
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13 Identity = 66/224 (29.46%), Postives = 103/224 (45.98%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTD-YRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD-----------KRFAGFSKDGKQLDAEVHR----KYIYGG--------HVAAYMSTLME 695 R++VK++RRREGKTD Y+ RI +I + K R VVRF+N+ ++AQ++ + GD +A A + EL ++G G N AAY GLL+ R L K +++ A+LDVGL + T G R+F +PH + + A ++ D KQ + E+++ KY+ G H+ S +ME Sbjct: 6 RYKVKFRRRREGKTDYYKRRIMVI--------SGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDEEVQPSEDRLNGEHIAQYAADLKQSNPELYKIRFSKYLARGLEPENISKHIEEVKSKIME 194
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12 Identity = 58/199 (29.15%), Postives = 85/199 (42.71%), Query Frame = 3 Query: 105 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701 ++VK++RRRE KTDYR R++L+ K R V R T IAQIV + GD + +A++ EL + G + N +AY TG LL ++ L +G E A+LD+GL + T GN +F IPH ++ + I G H+ AY L E + Sbjct: 7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEEILPS-------------EERIRGEHIKAYAEMLKEQD 159
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12 Identity = 55/168 (32.74%), Postives = 76/168 (45.24%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAG 602 R++V +RRREGKT+Y R RL+ K R VR +N+ + Q + A I GD V+AAA++ EL ++G + N AAY TG L R L+ + A+LDVGL K G+RVF IPHS++ G Sbjct: 6 RYRVPLRRRREGKTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPG 140
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12 Identity = 65/201 (32.34%), Postives = 86/201 (42.79%), Query Frame = 3 Query: 90 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 689 A+ ++VKY+RRREGKT+Y R + + R VVR TNK IIAQI N GD ++ AA++ EL ++G + L N AAY TG LL R LK G E A+ D+GL G+R+F IP D G +D I G H+A+Y L Sbjct: 2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGD---LGIKED-----------RIKGVHIASYAQKL 155
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12 Identity = 58/204 (28.43%), Postives = 87/204 (42.65%), Query Frame = 3 Query: 90 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDE 701 A+ R++V ++RRREGKT YR R++L+ K R VVR N +I+AQ+V + GD V+ +++ L +YG + N +AY GL+ LK R A+LD+G K+T GN ++ IPHS+ + I G H+A Y L E+E Sbjct: 2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------------------------RGYKEAVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE 159
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12 Identity = 60/193 (31.09%), Postives = 88/193 (45.60%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 677 R++V ++RRREGKTDY R++LI + K R VVR T+ +IAQI+ GD VLAAA + EL + +G + N +AAY TGLL+ + E VE A+LD+GL + G+RV+ +P S+ F D + ++I G + Y Sbjct: 6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVFPS--------DDRIRGEHIAGNTASKY 157
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12 Identity = 56/196 (28.57%), Postives = 81/196 (41.33%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 689 R+ V +RRRE +T+Y R+RL+ K R V R +N AQ+V GD +A+A + +L +G E N AAY TGLL +R ++ G D A+LD+GL T GN+VF +PH++ FA + + G H+A Y L Sbjct: 6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQR-------------TRGAHIAEYAEQL 155
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12 Identity = 62/199 (31.16%), Postives = 85/199 (42.71%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED 698 R++V ++RRREG T+YR R RLI K R VVR TNK IIAQ+V A GD + L ++G N +AAY GL+ Y+ + E A+LD+GL + G+RVF IPH G+++ E R + G HVA Y + L E+ Sbjct: 6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPH-----------GEEVLPEDDR--VSGKHVAEYAAKLKEE 158
BLAST of FC875552 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12 Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 3 Query: 102 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLK 392 R++V +RRREGKT+Y R +++ RFVVR T K II QIV+A GD +AAA++ EL +YG GL N AAY TGLL A R LK Sbjct: 6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK 96 The following BLAST results are available for this feature:
BLAST of FC875552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875552 ID=FC875552; Name=FC875552; organism=Citrus clementina; type=EST; length=702bpback to top |