FC875555

Overview
NameFC875555
Unique NameFC875555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875555 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.711e-59
Identity = 85/104 (81.73%), Postives = 95/104 (91.35%), Query Frame = 1
Query:  286 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 597
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAEN
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAEN 104          

HSP 2 Score: 68.1662 bits (165), Expect = 4.711e-59
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  597 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 722
            +K ARVL+VCSE TAVTFRGP++T +DSLVGQALF DGAAA+
Sbjct:  105 NKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAI 146          
BLAST of FC875555 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.189e-54
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1
Query:  370 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 597
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAEN 76          

HSP 2 Score: 80.8777 bits (198), Expect = 7.189e-54
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 3
Query:  597 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 722
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFGDGAAA+
Sbjct:   77 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAAL 118          
BLAST of FC875555 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.527e-40
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1
Query:  427 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 597
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAEN 56          

HSP 2 Score: 80.8777 bits (198), Expect = 3.527e-40
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 3
Query:  597 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 722
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFGDGAAA+
Sbjct:   57 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAAL 98          
BLAST of FC875555 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.386e-24
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 3
Query:  597 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 722
            +KGARVLVVCSEITAVTFRGP+DTHLDSLVGQALFGDGAAAV
Sbjct:   24 NKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAV 65          

HSP 2 Score: 50.8322 bits (120), Expect = 2.386e-24
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 1
Query:  529 MMYQQGCFAGGTVLRLAKDLAEN 597
            MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAEN 23          
BLAST of FC875555 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.974e-18
Identity = 54/196 (27.55%), Postives = 99/196 (50.51%), Query Frame = 1
Query:    7 TLTKHEPQTYSLRVQLEMATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAE 594
            ++ +H+ Q   ++V ++       R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+
Sbjct: 2755 SVQQHQKQQQKVQV-IQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAK 2945          

HSP 2 Score: 29.6462 bits (65), Expect = 1.974e-18
Identity = 14/37 (37.84%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  609 RVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAA 719
            R+LVVC+E+ ++ F        D +V  ++F DG+AA
Sbjct: 2951 RILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAA 2985          
The following BLAST results are available for this feature:
BLAST of FC875555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY4.711e-5981.73Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA7.189e-5494.74Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA3.527e-4091.23Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO2.386e-2495.24Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI1.974e-1827.55Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC31405C01EF CTVClemen1 Citrus clementina cDNA clone C31405C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875555 ID=FC875555; Name=FC875555; organism=Citrus clementina; type=EST; length=723bp
GAGTGCACACTCACCAAGCACGAGCCACAAACATATTCATTAAGGGTTCA
ACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACG
GCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTC
AACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCA
TATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGA
TTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCC
AACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGT
GGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCA
AAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACC
ACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGAT
CGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTT
TCGCCGGTGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACACA
AGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCGGTCACTTTC
CGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTGTT
CGGTGATGGTGCTGCTGCTGTGA
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