FC875558

Overview
NameFC875558
Unique NameFC875558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:5..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_ASPKA (78 kDa glucose-regulated protein homolog OS=Aspergillus kawachi GN=bipA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.418e-42
Identity = 85/135 (62.96%), Postives = 107/135 (79.26%), Query Frame = 3
Query:  147 SLVVLAIVFFGGL--FAISIAKEEAT---KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            ++  L +VF   L  F  + A++E +     GTVIGIDLGTTYSCVGV +NG VEI+ NDQGNRITPS+VAFTD ERL+G+AAKNQ A NP RTIFD+KRLIGRKF+DK+VQ+D K  PYK+VN+DGKP+++V +
Sbjct:   18 TIFYLLLVFIAPLAFFGTAHAQDETSPQESYGTVIGIDLGTTYSCVGVMQNGKVEILVNDQGNRITPSYVAFTDEERLVGDAAKNQYAANPRRTIFDIKRLIGRKFDDKDVQKDAKHFPYKVVNKDGKPHVKVDV 152          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_ASPAW (78 kDa glucose-regulated protein homolog OS=Aspergillus awamori GN=bipA PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.418e-42
Identity = 85/135 (62.96%), Postives = 107/135 (79.26%), Query Frame = 3
Query:  147 SLVVLAIVFFGGL--FAISIAKEEAT---KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            ++  L +VF   L  F  + A++E +     GTVIGIDLGTTYSCVGV +NG VEI+ NDQGNRITPS+VAFTD ERL+G+AAKNQ A NP RTIFD+KRLIGRKF+DK+VQ+D K  PYK+VN+DGKP+++V +
Sbjct:   18 TIFYLLLVFIAPLAFFGTAHAQDETSPQESYGTVIGIDLGTTYSCVGVMQNGKVEILVNDQGNRITPSYVAFTDEERLVGDAAKNQYAANPRRTIFDIKRLIGRKFDDKDVQKDAKHFPYKVVNKDGKPHVKVDV 152          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 81/137 (59.12%), Postives = 102/137 (74.45%), Query Frame = 3
Query:  129 SWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            SW    S++    + F   F       +   +GTVIGIDLGTTYSCVGV + G VEI+ NDQGNRITPS+VAFTD ERL+G+AAKNQAA NP RTIFD+KRLIGRKF DK+VQ D+K  PYK+V++D KP ++V+++
Sbjct:    7 SWALGLSILGFFALLFSAGFVQQAHANDTEAMGTVIGIDLGTTYSCVGVMQKGKVEILVNDQGNRITPSYVAFTDEERLVGDAAKNQAAANPHRTIFDIKRLIGRKFSDKDVQNDIKHFPYKVVSKDDKPVVKVEVK 143          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.956e-41
Identity = 83/127 (65.35%), Postives = 100/127 (78.74%), Query Frame = 3
Query:  153 VVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQV 530
            ++LA+V F GL      KE+  +LGTVIGIDLGTTYSCVGVYKNG VEIIANDQGNRITPS+VAFT D ERLIG+AAKNQ   NP+ T+FD KRLIGR++ D  VQ D+K  P+K+V ++ KP+I V
Sbjct:    5 ILLAVVAFVGLSLGEEKKEKDKELGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTADGERLIGDAAKNQLTTNPENTVFDAKRLIGREWSDTNVQHDIKFFPFKVVEKNSKPHISV 131          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.779e-41
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 3
Query:  168 VFFGGLFAISI-----AKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            +F   LF + +     AK++    GTVIGIDLGTTYSCV V KNG  EI+AN+QGNRITPS+VAFTD ERLIG+AAKNQ A NP  TIFD+KRLIG KF D+ VQRD+K  P+K+V++DGKP +QV+++
Sbjct:   12 LFLYALFVVLLPFQARAKDDVENYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQIAANPTNTIFDIKRLIGLKFNDRSVQRDIKHLPFKVVDKDGKPVVQVKVK 140          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_ECHMU (78 kDa glucose-regulated protein OS=Echinococcus multilocularis GN=GRP78 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.281e-39
Identity = 76/119 (63.87%), Postives = 96/119 (80.67%), Query Frame = 3
Query:  183 LFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            +  +S  K    + GTVIGIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAF+ D ERLIG+AAKNQ   NP  T+FD KRLIGR ++DK+VQ D+K  P+K++N++ KPY++VQ+
Sbjct:   14 ILTLSHCKSGKEEYGTVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFSGDGERLIGDAAKNQLTSNPKNTLFDAKRLIGRDYDDKDVQGDIKRYPFKVINKNNKPYMKVQV 132          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.281e-39
Identity = 77/124 (62.10%), Postives = 97/124 (78.23%), Query Frame = 3
Query:  168 VFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            +F   +  +S  K    + GTVIGIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAF+ D ERLIG+AAKNQ   NP  T+FD KRLIGR + DK+VQ D+K  P+K++N++ KPY++VQ+
Sbjct:    9 IFLLCILTLSRCKSGKEEYGTVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFSGDGERLIGDAAKNQLTSNPKNTLFDAKRLIGRDYHDKDVQGDIKRYPFKVINKNNKPYMKVQV 132          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.281e-39
Identity = 82/131 (62.60%), Postives = 99/131 (75.57%), Query Frame = 3
Query:  156 VLAIVFFGGLFAISIAKEE------ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQ 527
            +L I+F   L   +   EE       +++GTVIGIDLGTTYSCVGV+KNG V+IIANDQGNRITPS+VAFT D ERLIG+AAKNQ   NP+ TIFDVKRLIGR F+DK VQ D+K  P+K+ N + KP+IQ
Sbjct:    9 LLVILFSSNLLVRADGDEEDEGDKKKSEVGTVIGIDLGTTYSCVGVFKNGRVDIIANDQGNRITPSYVAFTADGERLIGDAAKNQLTSNPENTIFDVKRLIGRTFDDKSVQHDIKFYPFKVTNANNKPHIQ 139          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP74_PARLI (Heat shock 70 kDa protein IV OS=Paracentrotus lividus GN=HSP70IV PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.242e-38
Identity = 73/103 (70.87%), Postives = 87/103 (84.47%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQ 533
            G  IGIDLGTTYSCVGV++NG VEIIANDQGNR TPS+VAFTDSERLIG+AAKNQ A+NP  TIFD KRLIGR+F D  +Q DMK  P++++N+DGKP +Q +
Sbjct:    4 GPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTIFDAKRLIGRRFNDSSIQADMKHWPFRVINKDGKPMLQAE 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_YEAST (78 kDa glucose-regulated protein homolog OS=Saccharomyces cerevisiae GN=KAR2 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.242e-38
Identity = 72/111 (64.86%), Postives = 90/111 (81.08%), Query Frame = 3
Query:  207 EEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            ++    GTVIGIDLGTTYSCV V KNG  EI+AN+QGNRITPS+VAFTD ERLIG+AAKNQ A NP  TIFD+KRLIG K+ D+ VQ+D+K  P+ +VN+DGKP ++V ++
Sbjct:   44 DDVENYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVK 154          
The following BLAST results are available for this feature:
BLAST of FC875558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_ASPKA1.418e-4262.9678 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPAW1.418e-4262.9678 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_NEUCR7.036e-4259.1278 kDa glucose-regulated protein homolog OS=Neuros... [more]
HSP7C_DROME5.956e-4165.35Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_CANGA7.779e-4162.0278 kDa glucose-regulated protein homolog OS=Candid... [more]
GRP78_ECHMU7.281e-3963.8778 kDa glucose-regulated protein OS=Echinococcus m... [more]
GRP78_ECHGR7.281e-3962.1078 kDa glucose-regulated protein OS=Echinococcus g... [more]
GRP78_APLCA7.281e-3962.6078 kDa glucose-regulated protein OS=Aplysia califo... [more]
HSP74_PARLI1.242e-3870.87Heat shock 70 kDa protein IV OS=Paracentrotus livi... [more]
GRP78_YEAST1.242e-3864.8678 kDa glucose-regulated protein homolog OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionC31405C05EF CTVClemen1 Citrus clementina cDNA clone C31405C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875558 ID=FC875558; Name=FC875558; organism=Citrus clementina; type=EST; length=541bp
GGAAACCAGAAGGCCTTTCGAAAGAAAAAAACACACTTCAAACATCGAAA
CCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTAT
AATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCCC
TCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAATT
GCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTGG
TACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATCA
TAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCACT
GACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCAA
TCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTTG
AGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGTG
AATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGA
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