FC875558

Overview
NameFC875558
Unique NameFC875558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.342e-37
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            IGIDLGTTYSCVG + N  VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  TIFD KRLIGR+F D EVQ DMK  P+K++ +DGKP IQV+ +
Sbjct:    5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFK 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 154.836 bits (390), Expect = 2.342e-37
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 3
Query:  213 ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            A   G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMKL P++++N  GKP + V  +
Sbjct:    2 AANKGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVINEAGKPKVMVSYK 110          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.342e-37
Identity = 78/121 (64.46%), Postives = 95/121 (78.51%), Query Frame = 3
Query:  183 LFAISIAKEEATK--LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            L + + A+EE  K  +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITP +VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I
Sbjct:   12 LLSAARAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPPYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDI 132          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.059e-37
Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  TIFD KRLIGRKFED  VQ DMK  P+++V+  GKP +QV+ +
Sbjct:    5 GPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDRKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYK 109          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.059e-37
Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = 3
Query:  150 LVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            L  L ++    +FA S   ++   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K++ +  KPYI+V I
Sbjct:    6 LFALVLLVSASVFA-SDDDDKKDDIGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKYLPFKVIEKKTKPYIEVDI 134          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.059e-37
Identity = 76/127 (59.84%), Postives = 94/127 (74.02%), Query Frame = 3
Query:  171 FFGGLFAISIA-----KEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            +F  LF + +A            GTVIGIDLGTTYSCV V KNG VEIIANDQGNRITPS+VAFT+ ERL+GEAAKNQA  NP+ TIFD+KRLIGRKF++K + +D+K  P+ IVN   +P ++V +
Sbjct:   12 YFVALFLLPMAFASGDDNSTESYGTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNV 138          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 3.995e-37
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 3
Query:  213 ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            A   G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMKL P++++N  GKP + V  +
Sbjct:    2 AANKGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVINEAGKPKVLVSYK 110          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.995e-37
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 3
Query:  213 ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            A   G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMKL P++++N  GKP + V  +
Sbjct:    2 AAAKGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVINEGGKPKVLVSYK 110          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.995e-37
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQ 533
            GTVIGIDLGTTYSCVGV KNG VEI+ANDQGNRITPS+VAFT  ERLIG+AAKNQA+ N + T+FD+KRLIG K+ DK VQ+++K  PYKI  +DGKP ++V+
Sbjct:   49 GTVIGIDLGTTYSCVGVMKNGKVEILANDQGNRITPSYVAFTPEERLIGDAAKNQASSNVENTVFDIKRLIGLKYNDKMVQKEIKHLPYKIDKKDGKPVVKVE 151          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.218e-37
Identity = 72/113 (63.72%), Postives = 93/113 (82.30%), Query Frame = 3
Query:  204 KEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT--DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 536
            +++ TK GT+IGIDLGTTYSCVGVYKNG VEIIANDQGNRITPS+VAF+    +RLIG+AAKNQ  +NP+ TIFD KRLIGR + DK VQ D+K  P+K++++  KP ++V++
Sbjct:   26 EKKETKYGTIIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFSGEQGDRLIGDAAKNQLTINPENTIFDAKRLIGRDYNDKTVQADIKHWPFKVLDKSNKPSVEVKV 138          
The following BLAST results are available for this feature:
BLAST of FC875558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_SCHPO2.342e-3771.57Probable heat shock protein ssa1 OS=Schizosaccharo... [more]
HS71L_MOUSE2.342e-3766.97Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
GRP78_PONAB2.342e-3764.4678 kDa glucose-regulated protein OS=Pongo abelii G... [more]
HSP72_MOUSE3.059e-3770.48Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
GRP78_XENLA3.059e-3759.2378 kDa glucose-regulated protein OS=Xenopus laevis... [more]
GRP78_SCHPO3.059e-3759.8478 kDa glucose-regulated protein homolog OS=Schizo... [more]
HS71L_RAT3.995e-3766.97Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_MACFA3.995e-3766.97Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
GRP78_DEBHA3.995e-3770.8778 kDa glucose-regulated protein homolog OS=Debary... [more]
HSP7C_CAEBR5.218e-3763.72Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]

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Properties
Property NameValue
Genbank descriptionC31405C05EF CTVClemen1 Citrus clementina cDNA clone C31405C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875558 ID=FC875558; Name=FC875558; organism=Citrus clementina; type=EST; length=541bp
GGAAACCAGAAGGCCTTTCGAAAGAAAAAAACACACTTCAAACATCGAAA
CCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTAT
AATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCCC
TCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAATT
GCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTGG
TACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATCA
TAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCACT
GACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCAA
TCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTTG
AGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGTG
AATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGA
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