FC875558

Overview
NameFC875558
Unique NameFC875558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.840e-36
Identity = 71/99 (71.72%), Postives = 86/99 (86.87%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQV 530
            +GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD++RLIG+AAKNQ A+NP+ TIFD KRLIGRKFED  VQ DMK  P+++V+  GKP I+V
Sbjct:    7 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTDRLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKV 105          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP71_YEAST (Heat shock protein SSA1 OS=Saccharomyces cerevisiae GN=SSA1 PE=1 SV=4)

HSP 1 Score: 149.443 bits (376), Expect = 9.840e-36
Identity = 70/106 (66.04%), Postives = 85/106 (80.19%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            +   +GIDLGTTYSCV  + N  V+IIANDQGNR TPS+VAFTD+ERLIG+AAKNQAA+NP  T+FD KRLIGR F D EVQ DMK  P+K+++ DGKP IQV+ +
Sbjct:    1 MSKAVGIDLGTTYSCVAHFANDRVDIIANDQGNRTTPSFVAFTDTERLIGDAAKNQAAMNPSNTVFDAKRLIGRNFNDPEVQADMKHFPFKLIDVDGKPQIQVEFK 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.192e-35
Identity = 69/105 (65.71%), Postives = 87/105 (82.86%), Query Frame = 3
Query:  225 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            G  +GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTDSERLIG+AAKNQ A+NP  T+FD KRLIGR+F+D  VQ DMK  P++++N   +P +QV+ +
Sbjct:    4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPCNTVFDAKRLIGRRFDDGVVQSDMKHWPFEVINDSTRPKLQVEYK 108          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.863e-35
Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDG-KPYIQVQIR 539
            +GIDLGTTYSCVGV+ +G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF+D  VQ DMK  P+K+++ +G KP +QV+ +
Sbjct:    7 VGIDLGTTYSCVGVFMHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVFDAKRLIGRKFDDPAVQSDMKHWPFKVISAEGAKPKVQVEYK 109          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP75_DROME (Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.863e-35
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            IGIDLGTTYSCVGVY++G VEIIANDQGNR TPS+VAFTDSERLIG+ AKNQ A+NP  T+FD KRLIGRK++D ++  DMK  P+K+V+  GKP I V+ +
Sbjct:    4 IGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYK 105          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 2.863e-35
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 3
Query:  222 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            +   +GIDLGTTYSCV  + N  VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQAA+NP  T+FD KRLIGRKF+D EV  D K  P+K++++ GKP +QV+ +
Sbjct:    1 MSKAVGIDLGTTYSCVAHFANDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQAAMNPHNTVFDAKRLIGRKFDDPEVTNDAKHYPFKVIDKGGKPVVQVEYK 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP74_DROME (Major heat shock 70 kDa protein Bbb OS=Drosophila melanogaster GN=Hsp70Bbb PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.863e-35
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            IGIDLGTTYSCVGVY++G VEIIANDQGNR TPS+VAFTDSERLIG+ AKNQ A+NP  T+FD KRLIGRK++D ++  DMK  P+K+V+  GKP I V+ +
Sbjct:    4 IGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYK 105          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP73_DROME (Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.863e-35
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            IGIDLGTTYSCVGVY++G VEIIANDQGNR TPS+VAFTDSERLIG+ AKNQ A+NP  T+FD KRLIGRK++D ++  DMK  P+K+V+  GKP I V+ +
Sbjct:    4 IGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYK 105          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP72_USTMA (Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=UMS2 PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.863e-35
Identity = 69/102 (67.65%), Postives = 85/102 (83.33%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            IGIDLGTTYSCV V++N  VE+IANDQGNR TPS+VAFTDSERLIG+AAKNQ A+NP  T+FD KRLIGRKF+D EVQ DMK  P+++ +  GKP I+++ +
Sbjct:    5 IGIDLGTTYSCVAVWQNDRVEVIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPHNTVFDAKRLIGRKFDDAEVQSDMKHWPFEVTSVGGKPQIRIEYK 106          
BLAST of FC875558 vs. ExPASy Swiss-Prot
Match: HSP72_DROME (Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.863e-35
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 3
Query:  234 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIR 539
            IGIDLGTTYSCVGVY++G VEIIANDQGNR TPS+VAFTDSERLIG+ AKNQ A+NP  T+FD KRLIGRK++D ++  DMK  P+K+V+  GKP I V+ +
Sbjct:    4 IGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYK 105          
The following BLAST results are available for this feature:
BLAST of FC875558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7D_MANSE9.840e-3671.72Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HSP71_YEAST9.840e-3666.04Heat shock protein SSA1 OS=Saccharomyces cerevisia... [more]
HSP70_ONCMY2.192e-3565.71Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP7A_CAEEL2.863e-3567.96Heat shock 70 kDa protein A OS=Caenorhabditis eleg... [more]
HSP75_DROME2.863e-3568.63Major heat shock 70 kDa protein Bc OS=Drosophila m... [more]
HSP74_YEAST2.863e-3564.15Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HSP74_DROME2.863e-3568.63Major heat shock 70 kDa protein Bbb OS=Drosophila ... [more]
HSP73_DROME2.863e-3568.63Major heat shock 70 kDa protein Bb OS=Drosophila m... [more]
HSP72_USTMA2.863e-3567.65Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=... [more]
HSP72_DROME2.863e-3568.63Major heat shock 70 kDa protein Ba OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionC31405C05EF CTVClemen1 Citrus clementina cDNA clone C31405C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875558 ID=FC875558; Name=FC875558; organism=Citrus clementina; type=EST; length=541bp
GGAAACCAGAAGGCCTTTCGAAAGAAAAAAACACACTTCAAACATCGAAA
CCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTAT
AATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCCC
TCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAATT
GCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTGG
TACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATCA
TAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCACT
GACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCAA
TCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTTG
AGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGTG
AATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGA
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