FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_LEGPA (Chaperone protein htpG OS=Legionella pneumophila (strain Paris) GN=htpG PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.169e-30
Identity = 65/129 (50.39%), Postives = 98/129 (75.97%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ EV +++ ++++SLYSNK+IFLRELISNASDALDK+RFL+L++  +     + K+ IQI  +++ + ++I D GIG++ E+ ++NLGTIAKSGT  F+ ++  + + D  LIGQFGVGFYS ++ AD
Sbjct:   10 FQTEVKQMLHLVVHSLYSNKEIFLRELISNASDALDKLRFLALSNGSLFENDSDLKISIQI--NEKLQTITISDNGIGLSWEEAVENLGTIAKSGTKEFISQLTGEQAKDSQLIGQFGVGFYSAFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_HAEPS (Chaperone protein htpG OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=htpG PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.169e-30
Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +  N E   FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L+  E L EGD  +L ++I +D+    ++I D GIGM++E +I +LGTIAKSGT  F+  +    + D  LIGQFGVGFYS ++ AD
Sbjct:    1 MSTNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSQPE-LYEGDG-ELRVRISIDEALGTITISDNGIGMSREQVIDHLGTIAKSGTKEFLNALGSDQAKDSQLIGQFGVGFYSSFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BORA1 (Chaperone protein htpG OS=Bordetella avium (strain 197N) GN=htpG PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.169e-30
Identity = 70/139 (50.36%), Postives = 99/139 (71.22%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++   E+L  GD ++L I++  DK  + ++I D GIG+++E+ I NLGTIA+SGT  F  ++      D  LIGQFGVGFYS ++ AD   V+
Sbjct:    7 SETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPELLA-GD-SELAIRVSYDKAARTITIADNGIGLSREEAIANLGTIARSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADRVSVL 143          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_TREPA (Chaperone protein htpG OS=Treponema pallidum GN=htpG PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.198e-29
Identity = 72/137 (52.55%), Postives = 97/137 (70.80%), Query Frame = 2
Query:  305 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            ++EFQ EVS+L+ +II+SLYS+K+IFLRELISNASDALDK+++ +L D     +  + +  I I  +++ + L +RD GIGM  EDL  NLGTIA+SGT AF+  +      D NLIGQFGVGFYS ++ A   EVI
Sbjct:    3 QYEFQTEVSQLLTLIIHSLYSHKEIFLRELISNASDALDKLKYEALVDGTY--KQLHCEARIDIAFEEDAQRLVVRDTGIGMNAEDLRANLGTIARSGTKAFLSTLTRDQKQDSNLIGQFGVGFYSAFMVASKVEVI 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_HAEIN (Chaperone protein htpG OS=Haemophilus influenzae GN=htpG PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.198e-29
Identity = 71/138 (51.45%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +  N E   FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++   L EGD   L +++  D +K  ++I D GIGMT+E +I +LGTIAKSGT  F+  +    + +  LIGQFGVGFYS ++ AD
Sbjct:    1 MSQNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSN-PALYEGDG-DLRVRVSFDADKGTITISDNGIGMTREQVIDHLGTIAKSGTKEFLTALGQDQAKNSQLIGQFGVGFYSAFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_HAEIE (Chaperone protein htpG OS=Haemophilus influenzae (strain PittEE) GN=htpG PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.198e-29
Identity = 71/138 (51.45%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +  N E   FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++   L EGD   L +++  D +K  ++I D GIGMT+E +I +LGTIAKSGT  F+  +    + +  LIGQFGVGFYS ++ AD
Sbjct:    1 MSQNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSN-PALYEGDG-DLRVRVSFDADKGTITISDNGIGMTREQVIDHLGTIAKSGTKEFLTALGQDQAKNSQLIGQFGVGFYSAFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_HAEI8 (Chaperone protein htpG OS=Haemophilus influenzae (strain 86-028NP) GN=htpG PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.198e-29
Identity = 71/138 (51.45%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +  N E   FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++   L EGD   L +++  D +K  ++I D GIGMT+E +I +LGTIAKSGT  F+  +    + +  LIGQFGVGFYS ++ AD
Sbjct:    1 MSQNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSN-PALYEGDG-DLRVRVSFDADKGTITISDNGIGMTREQVIDHLGTIAKSGTKEFLTALGQDQAKNSQLIGQFGVGFYSAFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PELLD (Chaperone protein htpG OS=Pelodictyon luteolum (strain DSM 273) GN=htpG PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.564e-29
Identity = 70/137 (51.09%), Postives = 99/137 (72.26%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTD---KEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSG---DLNLIGQFGVGFYSVYLGAD 694
            ++FE++AE+ +L+D+I++SLY++ +IFLREL+SNASDAL K RF +LTD    +V GE       I+I LD +    +I D GIGMT+E+LI NLGT+A+SGT  F++ ++      D NLIGQFGVGFYSV++  D
Sbjct:   10 QEFEYKAEMKQLLDLIVHSLYTHPEIFLRELVSNASDALSKARFSALTDDTMAKVSGEA-----AIRISLDAKTAAFAIEDTGIGMTEEELIANLGTVARSGTLGFMQALRQEKKELDGNLIGQFGVGFYSVFMVTD 141          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_FRASC (Chaperone protein htpG OS=Frankia sp. (strain CcI3) GN=htpG PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.564e-29
Identity = 68/140 (48.57%), Postives = 97/140 (69.29%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD----LNLIGQFGVGFYSVYLGAD 694
            +    E  EFQAE  +L+ ++++S+YSNKDIFLRELISNASDALDK+R  SL         D+  L I+I+ D   + L++RD GIGM++++++  +GTIAKSGT+  + K++ S D     +LIGQFGVGFYS ++ AD
Sbjct:    1 MSTRVETLEFQAEARQLLQLMVHSIYSNKDIFLRELISNASDALDKLRIASLVKDG--PRVDSADLRIEIEADVNARTLTVRDNGIGMSRDEVVGLIGTIAKSGTAELLRKLRESEDGAASSDLIGQFGVGFYSTFMVAD 138          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_VIBSL (Chaperone protein htpG OS=Vibrio splendidus (strain LGP32) GN=htpG PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.043e-29
Identity = 71/135 (52.59%), Postives = 100/135 (74.07%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            N E   FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++ + L +GD   L +++  + E   L+I D GIGM+++++I++LGTIAKSGT+ F  K+    S D  LIGQFGVGFYS ++ AD
Sbjct:    8 NKETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFQALSNGD-LYQGD-ADLGVKLSFNAEANTLTISDNGIGMSRDNVIEHLGTIAKSGTADFFSKLSEDQSKDSQLIGQFGVGFYSAFIVAD 140          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_LEGPA9.169e-3050.39Chaperone protein htpG OS=Legionella pneumophila (... [more]
HTPG_HAEPS9.169e-3052.17Chaperone protein htpG OS=Haemophilus parasuis ser... [more]
HTPG_BORA19.169e-3050.36Chaperone protein htpG OS=Bordetella avium (strain... [more]
HTPG_TREPA1.198e-2952.55Chaperone protein htpG OS=Treponema pallidum GN=ht... [more]
HTPG_HAEIN1.198e-2951.45Chaperone protein htpG OS=Haemophilus influenzae G... [more]
HTPG_HAEIE1.198e-2951.45Chaperone protein htpG OS=Haemophilus influenzae (... [more]
HTPG_HAEI81.198e-2951.45Chaperone protein htpG OS=Haemophilus influenzae (... [more]
HTPG_PELLD1.564e-2951.09Chaperone protein htpG OS=Pelodictyon luteolum (st... [more]
HTPG_FRASC1.564e-2948.57Chaperone protein htpG OS=Frankia sp. (strain CcI3... [more]
HTPG_VIBSL2.043e-2952.59Chaperone protein htpG OS=Vibrio splendidus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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