FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: TRAP1_DICDI (TNF receptor-associated protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=trap1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 70/166 (42.17%), Postives = 108/166 (65.06%), Query Frame = 2
Query:  191 PKVEEKLGAVPNGLSTDSDVAKREAESISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD-LNLIGQFGVGFYSVYL 685
            PKVEE+   +    +  ++   +E E +   S     EK  FQ E  +++ I+  SLY+ K++F+RELISNASDA++K+R   LT+  ++ E  +   EI+I  D++ K L I+D GIGMTK+++IKNLG I  SG+S F++K+  + D  ++IGQFGVGFYS ++
Sbjct:   67 PKVEEEDDEIAPDEAIKAEEKIKETERVIGLS-----EKLSFQTETQKILHIVAESLYTEKEVFIRELISNASDAIEKVRHTQLTNASMI-EDASIPFEIKISTDEDNKTLIIQDSGIGMTKDEMIKNLGKIGYSGSSDFIKKLGENPDKASIIGQFGVGFYSCFM 226          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_WOLPM (Chaperone protein htpG OS=Wolbachia pipientis wMel GN=htpG PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 70/134 (52.24%), Postives = 96/134 (71.64%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD----LNLIGQFGVGFYSVYLGA 691
            E  +F AEV ++++I+I+SLY+NKDIFLRELISNASDA DK+R+ S  +  +L   D  +L+I I  +K+K  L I D GIGM ++DLI NLGTIA SGT  F++ ++ S D    + LIG+FGVGFYS ++ A
Sbjct:   12 ENLKFDAEVGKVLNIVIHSLYTNKDIFLRELISNASDACDKLRYESQLNPNLLDLSD--ELKITISSNKDKNELYITDNGIGMNRQDLIDNLGTIASSGTQKFLDAIKNSKDSSQTVELIGKFGVGFYSSFMVA 143          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_GEOUR (Chaperone protein htpG OS=Geobacter uraniireducens (strain Rf4) GN=htpG PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 70/136 (51.47%), Postives = 101/136 (74.26%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN---LIGQFGVGFYSVYLGADYXEVI 709
            +F+ EV +L+D++I+SLYSNKDIFLREL+SNASDA+DK++F S ++ ++L EG NT  +I++  DK    L+IRD GIGM   ++ +N+GTIA+SGT AF+E ++     N   LIGQFGVGFY+ ++ AD   +I
Sbjct:    7 KFETEVQQLLDLVIHSLYSNKDIFLRELVSNASDAIDKVKFESHSNMDIL-EG-NTDWKIKLIPDKTAGTLTIRDNGIGMNVVEVEENIGTIARSGTRAFMENLKDKNVQNNPELIGQFGVGFYASFMVADKVTLI 140          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_DESDG (Chaperone protein htpG OS=Desulfovibrio desulfuricans (strain G20) GN=htpG PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 69/134 (51.49%), Postives = 99/134 (73.88%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD--LNLIGQFGVGFYSVYLGAD 694
            AEK EF+ EV +L+ II +SLY+N++IFLREL+SNASDALDK+RF + T  E     D   L I I +++E + L++ D GIGMT+++LI NLGTIA SG+  F++++   G+   N+IG+FGVGFY+V++ AD
Sbjct:    9 AEKHEFRTEVRKLLHIITHSLYTNREIFLRELVSNASDALDKLRF-AQTRGEAAPAAD-LDLNIAITVNEETRTLTVSDTGIGMTRQELIDNLGTIASSGSERFLKELAEKGEQASNIIGRFGVGFYAVFMVAD 140          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_CUPTR (Chaperone protein htpG OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=htpG PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 67/133 (50.38%), Postives = 96/133 (72.18%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++ +  +L   ++  L I+I+ D + + L I D GIGM++++ I+NLGTIA+SGT  F +++      D  LIGQFGVGFYS ++ AD
Sbjct:    6 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLL--ENDADLAIRIEADAKARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLSGDQQKDAALIGQFGVGFYSAFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURCM (Chaperone protein htpG OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=htpG PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 70/133 (52.63%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF  L D  +     N  L I+I  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPN--LRIRIGFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLSGDQQKDAALIGQFGVGFYSGFIVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_ALKOO (Chaperone protein htpG OS=Alkaliphilus oremlandii (strain OhILAs) GN=htpG PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL--DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            E  +F+AE  RL+D++I+S+Y+ K+IFLRELISNASDA+DKI + +LTD+ +    +  K +  IK+  DKEK+IL I D GIGMTKE+L +NLG IAKSG+ AF    +     ++IGQFGVGFYS ++ A+   VI
Sbjct:    2 ETKQFKAESKRLLDLMIHSIYTQKEIFLRELISNASDAIDKIYYRALTDEAL----NFNKEDYYIKIIPDKEKRILRIIDTGIGMTKEELEENLGVIAKSGSLAFKSAHELKDGYDIIGQFGVGFYSSFMVAETVTVI 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_ALCBS (Chaperone protein htpG OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=htpG PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 67/129 (51.94%), Postives = 95/129 (73.64%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQAEVSRL+ ++I+SLYSN++IFLRELISNASDA DK+RF +L +  +L +G     +I +++DK+   L+I D GIGM++ +++ NLGTIA+SGT  F+  +      D  LIGQFGVGFYS ++ A+
Sbjct:   10 FQAEVSRLLHLMIHSLYSNREIFLRELISNASDACDKLRFEALDNPALLEQGGEP--QITLRVDKDAGTLTIADNGIGMSENEVVDNLGTIARSGTEKFLANLSGDQKKDAQLIGQFGVGFYSAFIVAE 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_NATTJ (Chaperone protein htpG OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=htpG PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 68/135 (50.37%), Postives = 95/135 (70.37%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF--VEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            EFQAE  RL+DI+INS+YSNK+IFLRELISNASDA+DK+ + SLTD  +  + +     I+I +DKE + L I D GIGMT+++L  N+G IA+SG+  F    + +     ++IGQFGVGFYS ++ A+   +I
Sbjct:    5 EFQAETKRLLDIVINSIYSNKEIFLRELISNASDAIDKLYYKSLTDNSL--DFNKDDYYIKITVDKENRQLKISDTGIGMTRQELEDNIGVIARSGSLDFKKANEQEIKDGHDIIGQFGVGFYSAFMVAEEVTII 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_CHLTE (Chaperone protein htpG OS=Chlorobium tepidum GN=htpG PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 71/140 (50.71%), Postives = 99/140 (70.71%), Query Frame = 2
Query:  293 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE---KMQTSG---DLNLIGQFGVGFYSVYLGAD 694
            ++  +FE++AE+ +L+++I++SLY++ +IFLRELISNASDAL K RF  L+  E L +  +  L+I I +DKE     I D GIGM++E+LI NLGT+A SGT  F+E   + Q  G   D NLIGQFGVGFYSV++  D
Sbjct:    7 SSVREFEYKAEMKQLLNLIVHSLYTHPEIFLRELISNASDALGKARFRMLSSDEGLDKSGD--LKITITVDKESGSFVIEDTGIGMSEEELISNLGTVASSGTLGFMEALKEQQKEGQRLDANLIGQFGVGFYSVFMVTD 144          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
TRAP1_DICDI2.668e-2942.17TNF receptor-associated protein 1 homolog, mitocho... [more]
HTPG_WOLPM2.668e-2952.24Chaperone protein htpG OS=Wolbachia pipientis wMel... [more]
HTPG_GEOUR2.668e-2951.47Chaperone protein htpG OS=Geobacter uraniireducens... [more]
HTPG_DESDG2.668e-2951.49Chaperone protein htpG OS=Desulfovibrio desulfuric... [more]
HTPG_CUPTR2.668e-2950.38Chaperone protein htpG OS=Cupriavidus taiwanensis ... [more]
HTPG_BURCM2.668e-2952.63Chaperone protein htpG OS=Burkholderia ambifaria (... [more]
HTPG_ALKOO2.668e-2952.17Chaperone protein htpG OS=Alkaliphilus oremlandii ... [more]
HTPG_ALCBS2.668e-2951.94Chaperone protein htpG OS=Alcanivorax borkumensis ... [more]
HTPG_NATTJ3.484e-2950.37Chaperone protein htpG OS=Natranaerobius thermophi... [more]
HTPG_CHLTE3.484e-2950.71Chaperone protein htpG OS=Chlorobium tepidum GN=ht... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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