FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RHOP2 (Chaperone protein htpG OS=Rhodopseudomonas palustris (strain HaA2) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.943e-29
Identity = 67/133 (50.38%), Postives = 96/133 (72.18%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD-LNLIGQFGVGFYSVYLGAD 694
            +E   FQAEV+ L++++++S+YS  DIFLRELISNASDALDK+R+ S+ +  ++ +G   K+ I  K  K    L++ D GIGM +++LI NLGTIAKSGT +F+ K+  + D   LIGQFGVGFY+ ++ AD
Sbjct:    8 SETKPFQAEVAELLNLMVHSVYSETDIFLRELISNASDALDKLRYESIANPALMADGGEPKIRIVPK--KAPDTLTVIDNGIGMDRQELIDNLGTIAKSGTKSFLTKLTEAKDGAGLIGQFGVGFYAAFMVAD 138          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RHOFD (Chaperone protein htpG OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.943e-29
Identity = 68/133 (51.13%), Postives = 92/133 (69.17%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV++L+ ++ +SLYSNK+IFLRELISNASDA DK+R+ ++ D  +    D   LE+++  D   K L+I D GIGM+ ++ I +LGTIAKSGT  FV K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTLSFQAEVAQLLHLVTHSLYSNKEIFLRELISNASDACDKLRYEAINDSGLY--EDAPTLEVRVSFDPAAKTLTISDNGIGMSAQEAIDHLGTIAKSGTKDFVSKLSGDQKADSQLIGQFGVGFYSGFIVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RHIME (Chaperone protein htpG OS=Rhizobium meliloti GN=htpG PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.943e-29
Identity = 64/144 (44.44%), Postives = 104/144 (72.22%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM---QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +  + EK  F+A+V++L+ ++++S+YS+K++FLRELISNA+DA +K+R+ ++   E+LG    ++  I + LD+E   L I D GIGM +++L+++LGTIA+SGT AF+E++   Q      LIGQFGVGFYS ++ AD  +V+
Sbjct:    4 VETSVEKHVFEADVAKLLHLMVHSVYSDKNVFLRELISNAADACEKLRYEAIVAPELLGSDPASR--ITLTLDEENARLVIEDNGIGMGRDELVESLGTIARSGTRAFMERIEAAQNKDGAQLIGQFGVGFYSAFMVADNVDVV 145          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RALME (Chaperone protein htpG OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.943e-29
Identity = 67/133 (50.38%), Postives = 95/133 (71.43%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++ +  +L   ++  L I+I+ D   + L I D GIGM++++ I+NLGTIA+SGT  F +++      D  LIGQFGVGFYS ++ AD
Sbjct:    6 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPALL--ENDADLAIRIEADPAARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLSGDQQKDAALIGQFGVGFYSAFIVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_MYCUA (Chaperone protein htpG OS=Mycobacterium ulcerans (strain Agy99) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.943e-29
Identity = 67/140 (47.86%), Postives = 98/140 (70.00%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGT----SAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            E+ EFQAE  +L+D++I+S+YSNKD FLRELISNASDALDK+R  +  +K++  E D + L I+ + DK  + L++RD GIGMT+ +++  +GT+AKSGT    +   E    +    LIGQFG+GFYS ++ AD  E++
Sbjct:    6 EQLEFQAEARQLLDLMIHSVYSNKDSFLRELISNASDALDKLRIEAFRNKDL--EVDTSDLHIETEADKGARTLTVRDNGIGMTRAEVVDLIGTLAKSGTAELRAQLREAKNDAASEELIGQFGIGFYSSFMVADKVELL 143          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURXL (Chaperone protein htpG OS=Burkholderia xenovorans (strain LB400) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.943e-29
Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQAEV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF ++ +   L E D   L I++  DK+ + ++I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEAI-ENSALYEND-PNLRIRVSYDKDARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFGKLSGDQQKDAALIGQFGVGFYSGFIVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PELPD (Chaperone protein htpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.762e-29
Identity = 68/131 (51.91%), Postives = 102/131 (77.86%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ---TSGDLNLIGQFGVGFYSVYLGAD 694
            +FQ EV +L+D++I+SLYSN+DIFLRELISN+SDA+DKIRF + +++E+L EG N+  +I++  DK+   L+I D GIGMT  ++ +N+GTIA+SGT AF++ ++    + +  LIGQFGVGFY+ ++ AD
Sbjct:    7 QFQTEVKQLLDLVIHSLYSNRDIFLRELISNSSDAIDKIRFEAHSNEELL-EG-NSDWKIKLIPDKDAGTLTILDNGIGMTMAEVEENIGTIARSGTKAFMQALKDKSATDNPELIGQFGVGFYASFMVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BURTA (Chaperone protein htpG OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.762e-29
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L +   L E D   L I++  DK  + L+I D GIGM++++ I NLGTIA+SGT  F  K+      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEAL-ENNALYESD-PNLRIRLSFDKAARTLTIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIGQFGVGFYSGFIVAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_NITHX (Chaperone protein htpG OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.014e-28
Identity = 64/145 (44.14%), Postives = 107/145 (73.79%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE-------KMQTSGD-LNLIGQFGVGFYSVYLGADYXEVI 709
            AE   F+A+V++L+ ++++S+YS+KD+FLRELISNA+DA +++R+ +++D  +L   D+ + +I I +D E++ L++ D GIGM++++++  LGTIA+SGT AF+E       K   +GD + +IGQFGVGFYS ++ AD  +VI
Sbjct:   11 AESRVFEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYDAISDPALL--ADDARPQIAITIDAERRQLTVDDNGIGMSRDEMVDALGTIARSGTKAFIEQAKVEQAKSAEAGDGVTVIGQFGVGFYSAFMVADQVDVI 153          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_METS4 (Chaperone protein htpG OS=Methylobacterium sp. (strain 4-46) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.014e-28
Identity = 68/138 (49.28%), Postives = 99/138 (71.74%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM---QTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            E+  F AEV RL+D+++++LYS ++IFLREL++NA+DA+D+ RF +LTD  +    D    +++I+ DK  + L+I D GIGM+KEDL +NLGTIA+SGT AF + +   +     +LIGQFGVGFYS ++ AD  EV
Sbjct:    6 ERHAFGAEVGRLLDLVVHALYSEREIFLRELVANAADAVDRRRFGALTDPALSLPAD---AKVRIRPDKAARTLAISDPGIGMSKEDLAQNLGTIARSGTRAFSQSLADAKPDERPSLIGQFGVGFYSAFMVADRVEV 140          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_RHOP25.943e-2950.38Chaperone protein htpG OS=Rhodopseudomonas palustr... [more]
HTPG_RHOFD5.943e-2951.13Chaperone protein htpG OS=Rhodoferax ferrireducens... [more]
HTPG_RHIME5.943e-2944.44Chaperone protein htpG OS=Rhizobium meliloti GN=ht... [more]
HTPG_RALME5.943e-2950.38Chaperone protein htpG OS=Ralstonia metallidurans ... [more]
HTPG_MYCUA5.943e-2947.86Chaperone protein htpG OS=Mycobacterium ulcerans (... [more]
HTPG_BURXL5.943e-2952.63Chaperone protein htpG OS=Burkholderia xenovorans ... [more]
HTPG_PELPD7.762e-2951.91Chaperone protein htpG OS=Pelobacter propionicus (... [more]
HTPG_BURTA7.762e-2952.63Chaperone protein htpG OS=Burkholderia thailandens... [more]
HTPG_NITHX1.014e-2844.14Chaperone protein htpG OS=Nitrobacter hamburgensis... [more]
HTPG_METS41.014e-2849.28Chaperone protein htpG OS=Methylobacterium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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