FC875566

Overview
NameFC875566
Unique NameFC875566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:498..1207. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 78/192 (40.62%), Postives = 111/192 (57.81%), Query Frame = 2
Query:   62 ERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEI-RRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPE---SKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            E + Q     PFL KTY LV +P  D VISW  +G +F+VW  + FA+D+LP++FKHNNFSSFVRQLNTYGFRK+ AD+WEFA+E+F R  +  L +I RRR + T QS           P +SGE     S   PE    + + S    +   L  E+ +      TL+  L  A+ +  ++++FL + ++
Sbjct:   57 EALLQGPQLPPFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSSPTQQS--------GLQPGSSGE-----SGLDPELNTLRREKSALLQEVTRLKQEHLQTIEQMSTLNQRLESAEDRQKQMVSFLAKLLQ 235          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 2
Query:   56 NRERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIM 655
            N       +V APF++KTYQ+V+DPSTD +I+W  +  +FIV    DF++ +LP YFKHNNFSSFVRQLNTYGFRK+  D+WEFANE+F RG +  L  I RRK A G                 G+D+             G +   +   L +E  +L  + + ++  +   +K+ ++++ FL + V+  PD + R+M
Sbjct:    5 NSNNNNNNNVIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHARGM---------------YGQDL-----------EDGEI-VREIERLKEEQRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVE-DPDLLPRMM 176          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 74/168 (44.05%), Postives = 100/168 (59.52%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNE-SGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            PAPFL+KTY++VDDPSTD V+SW++ S A+F+VW   +FA  LLP YFKH+NFSSF+RQLNTYGFRKI  ++WEFANE F +G +  L  I RRK                 P +S             S   G++   + A   DE  +L R+   L ++L ++K+Q
Sbjct:   19 PAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRK-----------------PIHS------------HSHPPGALPDNERAIFEDEIERLSREKSNLQADLWKSKQQ 157          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSA 388
            + P PFL KT+++VDDP+TD ++SWN  G +F+VW    F+  LLP +FKH+NFSSF+RQLNTYGFRKI A++WEFANE F  G R+ L  I+RR   T  S+
Sbjct:   25 NAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSS 127          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.191e-30
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKT 406
            PAPFL+KTY++VDD STD ++SW+ +  +FIVW  A+F++ LLP YFKHNNFSSF+RQLNTYGFRKI  ++WEF N++F +  +  L  I RRK     S   A  T
Sbjct:   21 PAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHSHPPASST 127          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.191e-30
Identity = 74/170 (43.53%), Postives = 99/170 (58.24%), Query Frame = 2
Query:   89 APFLMKTYQLVDDPSTDDVISWNESGA-TFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDE 595
            APFL+KT+++V+DP+TD V+SW  +   +F+VW    FA  LLP +FKH NFSSF+RQLNTYGFRK+ AD+WEFANE+F  G R  L  IRRR+   G  + T    +A +    G               +G VE            +LRRD E L+ ELA+ ++Q  E
Sbjct:   42 APFLVKTFEMVEDPATDAVVSWGGAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADRWEFANEDFLGGQRHLLANIRRRRRGAGTGSTT---PRAVNCGGGG--------------GEGEVE------------RLRRDKEALARELARLRRQQQE 182          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 58/110 (52.73%), Postives = 79/110 (71.82%), Query Frame = 2
Query:   56 NRERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQS 385
            N   ++  S+P PFL KTY++VDD S+D ++SW++S  +FIVW   +F++DLLP +FKHNNFSSF+RQLNTYGFRK   ++WEFAN++F RG    +  I RRK     S
Sbjct:    4 NNHGVSSSSLP-PFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHS 112          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.327e-30
Identity = 72/186 (38.71%), Postives = 102/186 (54.84%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAK--FADLSDENAKLRRDNETLSSELAQ-------AKKQCDELITFLTE 616
            P PFL KTY++V+DP+TD V+SW+    +F+VW +  F+  LLP YFKH+NFSSF+RQLNTYGFRKI  D+WEFANE F  G +  L  I+RR+    Q+    G              G +     +    G VE  K     L  E  +LR+   +  S++A         +K+  +++TFL +
Sbjct:   42 PPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGS-------------GMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAK 214          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.088e-29
Identity = 72/194 (37.11%), Postives = 106/194 (54.64%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTAT--GQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQ 661
            P PFL KT+ LV DP+TD V+SW  +G++F+VW    FA   LP +FKHNNFSSFVRQLNTYGFRKI  D+WEFAN+ F RG R  L  I+RR+  +    S Q  G           E++          K   ++  A+   L  +    + +   +   L  A+++  +++ FL   ++  PD  ++++ Q
Sbjct:   35 PPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQALGTCLEVGQFGLDEEI-------DRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQKQVQMMGFLARAMQ-NPDFFHQLIHQ 220          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.423e-29
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            P PFL KTY++V+D STD VISW+ +  +FIVW +  F+  LLP +FKH+NFSSF+RQLNTYGFRK+  D+WEFANE F  G +  L  I+RR+                   N G+ M          +  G+     +  + +E  +L+RD   L +E+ + ++Q
Sbjct:   29 PPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR-------------------NVGQSM--------NQQGSGACIEIGYYGMEEELERLKRDKNVLMTEIVKLRQQ 168          
The following BLAST results are available for this feature:
BLAST of FC875566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HSFA3_ORYSJ2.589e-3140.63Heat stress transcription factor A-3 OS=Oryza sati... [more]
HSFC1_ARATH5.767e-3138.00Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HSFA5_ORYSJ5.767e-3144.05Heat stress transcription factor A-5 OS=Oryza sati... [more]
HFA7A_ARATH5.767e-3156.31Heat stress transcription factor A-7a OS=Arabidops... [more]
HSFA5_ARATH2.191e-3055.14Heat stress transcription factor A-5 OS=Arabidopsi... [more]
HFA6A_ORYSJ2.191e-3043.53Putative heat stress transcription factor A-6a OS=... [more]
HFA4A_ARATH6.376e-3052.73Heat stress transcription factor A-4a OS=Arabidops... [more]
HSFA2_ARATH8.327e-3038.71Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HFA2D_ORYSJ1.088e-2937.11Heat stress transcription factor A-2d OS=Oryza sat... [more]
HSF30_SOLPE2.423e-2939.52Heat shock factor protein HSF30 OS=Solanum peruvia... [more]

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Properties
Property NameValue
Genbank descriptionC31405D01EF CTVClemen1 Citrus clementina cDNA clone C31405D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875566 ID=FC875566; Name=FC875566; organism=Citrus clementina; type=EST; length=710bp
ATTATTTTTGTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAG
GGGCAAATCGGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTG
ATGAAGACGTACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATC
GTGGAATGAAAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTG
CCAAGGATCTGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTT
GTCCGCCAACTCAATACTTATGGATTTCGGAAAATCGTGGCCGACAAATG
GGAATTCGCCAACGAGAACTTCCGTCGAGGACACAGAGAATTCTTGACGG
AAATCCGTCGCCGCAAGACAGCAACAGGGCAATCGGCTCAGACGGCGGGG
AAAACGAAAGCGACATCGCCATCGAATTCAGGGGAGGACATGGGGTCCAC
GTCCACGTCATCTCCGGAATCGAAGAACCAGGGATCGGTTGAGACCGCAA
AGTTCGCGGACTTATCGGACGAGAATGCGAAATTGAGAAGAGACAACGAG
ACACTGAGTTCCGAACTGGCGCAGGCGAAGAAACAGTGCGACGAGTTAAT
TACGTTTCTGACCGAGTACGTCAAGGTGGGGCCCGACCAGATCAATCGCA
TCATGGGGCAAGGAAGCTGTGGGTCCATCCTCGATGGGTTGGTCGGCGAT
ACTGATGATG
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