FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.267e-78
Identity = 140/221 (63.35%), Postives = 178/221 (80.54%), Query Frame = 3
Query:    6 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            S +GK   GY+S  GKR++MEDFYD +   VDG+ V +FGVFDGHGG+RAAE++K++LF NL+KHP+  +DTK AI+ETY  TD + L++E    RD GSTASTAILVG+ L VANVGDSR VI + G AI +S DHKP++ DER+RIE+AGG VMWAGTWRVGGVLA+SRAFG+++LKQ+VVA+PEI++  VD   E L+LASDGLWDVV NE+AVA+ +
Sbjct:   58 SANGKFSYGYASSPGKRSSMEDFYDTRIDGVDGETVGLFGVFDGHGGARAAEFVKQNLFTNLIKHPKLFSDTKSAIAETYTSTDSELLKAETSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVK 278          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.372e-76
Identity = 133/221 (60.18%), Postives = 181/221 (81.90%), Query Frame = 3
Query:    6 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            S++GK   GY+S  GKRA+MEDFY+ +  +VDGQ + +FGVFDGHGG++ AEY+K++LF +LL+HP+F++DTK+AI + Y+ TD +FLES+  +    GSTASTA+LVG+ L+VANVGDSR +I + G AI +S+DHKP++ DER+RIE+AGG VMWAGTWRVGGVLA+SRAFG+++LKQ+VV +PEI++  +D   E L+LASDGLWDVV NE+AV + R
Sbjct:   21 SQNGKFSYGYASSPGKRASMEDFYETRIDSVDGQIIGLFGVFDGHGGAKVAEYVKQNLFSHLLRHPKFISDTKVAIDDAYKSTDSEFLESD-SSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAIAVSKDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTR 240          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.051e-72
Identity = 128/217 (58.99%), Postives = 173/217 (79.72%), Query Frame = 3
Query:   18 KLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            K   GYSS +GKRATMED+++ + S+V+GQ V  FGVFDGHGG+R AEYLK +LF+NL+ H  F++DTK AI E ++QTD ++L  E    ++ GSTA+TA L+G+ L VANVGDSR V S+ G A+PLS+DHKP+R DER+RIE+AGG ++WAGTWRVGG+LA+SRAFG++ LK +V+AEPEIQ+ ++    E +V+ASDGLW+V+ N+DAVA+ R
Sbjct:  121 KFSYGYSSLKGKRATMEDYFETRISDVNGQMVAFFGVFDGHGGARTAEYLKNNLFKNLVSHDDFISDTKKAIVEVFKQTDEEYLIEEAGQPKNAGSTAATAFLIGDKLIVANVGDSRVVASRNGSAVPLSDDHKPDRSDERQRIEDAGGFIIWAGTWRVGGILAVSRAFGDKQLKPYVIAEPEIQEEDIST-LEFIVVASDGLWNVLSNKDAVAIVR 336          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.061e-44
Identity = 95/226 (42.04%), Postives = 145/226 (64.16%), Query Frame = 3
Query:    3 KSEDGKLRCGYSSFRGK-RATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV--MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            ++ +G ++ G+S  +GK   +MED++  K +N +G  + +F +FDGH G   A YL++HLF N+LK  +F+ D + AI++ Y+ TD   L   R      GSTA TAIL+ G  L++ANVGDSR ++S  GKA  +S DH P+   ER  IE+ GG V        RV G+LA+SR FG++ LK ++ +EPEI+D+ +D   + L+LASDG+  V+ N++AV +A+
Sbjct:   25 RNGEGGIKYGFSLIKGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFSNILKDGEFLVDPRRAIAKAYENTDQKILADNRTDLESGGSTAVTAILINGKALWIANVGDSRAIVSSRGKAKQMSVDHDPDDDTERSMIESKGGFVTNRPGDVPRVNGLLAVSRVFGDKNLKAYLNSEPEIKDVTIDSHTDFLILASDGISKVMSNQEAVDVAK 250          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.809e-44
Identity = 100/226 (44.25%), Postives = 147/226 (65.04%), Query Frame = 3
Query:    3 KSEDGKLRCGYSSFRGK-RATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV--MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            ++ DG+++ GYS  +GK    MED++  K   +DG  + +F ++DGH G R   YL++HLF N+LK  QF  D + +I   Y++TD   L    D  R  GSTA TAIL+ G  L+VANVGDSR V+S+ G+AI ++ DH+P+   ER  IE  GG V  M     RV G LA+SRAFG++ LK  + ++P+++D  +D+  ++LVLASDGLW V+ N++A+ +AR
Sbjct:   27 RNNDGEIKFGYSLVKGKANHPMEDYHVSKFVKIDGNELGLFAIYDGHLGERVPAYLQKHLFSNILKEEQFRYDPQRSIIAAYEKTDQAILSHSSDLGRG-GSTAVTAILMNGRRLWVANVGDSRAVLSQGGQAIQMTIDHEPH--TERLSIEGKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKTHLRSDPDVKDSSIDDHTDVLVLASDGLWKVMANQEAIDIAR 249          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.704e-40
Identity = 104/236 (44.07%), Postives = 138/236 (58.47%), Query Frame = 3
Query:    9 EDGKLRCGYSSFRGK---RATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTD------------TKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            EDG+    Y   RGK   R  MED +  K +      V  FGVFDGHGG  AAE++ E++       P+FM +            T+ A+   Y +TD +FL+ E       G+   TA+L    L V+N GD R V+S+AGKA  L+ DH+ +R DER+RIEN GG VV + GTWRV G LA+SR  G+  LKQ+VV++P+   L VD   E L+LASDGLWD V N++AV +AR
Sbjct:  125 EDGEEFAVYCR-RGKGRRRVEMEDRHVAKVALGGDPKVAFFGVFDGHGGKSAAEFVAENM-------PKFMAEEMCKVDGGDSGETEQAVKRCYLKTDEEFLKREES----GGACCVTALLQKGGLVVSNAGDCRAVLSRAGKAEALTSDHRASREDERERIENLGGFVVNYRGTWRVQGSLAVSRGIGDAHLKQWVVSDPDTTTLGVDSQCEFLILASDGLWDKVENQEAVDIAR 348          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.612e-40
Identity = 96/220 (43.64%), Postives = 138/220 (62.73%), Query Frame = 3
Query:   18 KLRCGYSSFRGK-RATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGN----HLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV--MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            +++ GY   +GK    MED+   +        + +F +FDGH G    ++L+ HLF+N+LK P+F+++ + AI   YQ TD   LES  +  R  GSTA TAIL+ +    +L VANVGDSR VISK+G A  LS DH+PN+  ER  IE  GG V  +     RV G LA++RAFG+R LK+ + +EP++ +  +DE  + L+LASDGLW V+ N++AV
Sbjct:   36 RVKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAIFDGHLGHTVPDFLRSHLFDNILKQPEFLSNPQAAIRNAYQLTDAKILESAAELGRG-GSTAVTAILISSENSVNLVVANVGDSRAVISKSGVAKQLSVDHEPNK--ERHSIEKKGGFVSNLPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVVEEPIDENTDFLILASDGLWKVMSNQEAV 252          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.612e-40
Identity = 92/226 (40.71%), Postives = 141/226 (62.39%), Query Frame = 3
Query:    3 KSEDGKLRCGYSSFRGK-RATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV--MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            +S++G ++ G+S  +GK    MED++     N+    + +F ++DGH G     YL++ LF N+LK  +F  D + +I++ Y++TD   L +  D  R  GSTA TAIL+ G  L++ANVGDSR V+S  G    +S DH+P    ER  IE+ GG V  +     RV G LA+SRAFG++ LK  + +EP+I++  VD   ++L+LASDG+W V+ NE+A+ +AR
Sbjct:   26 RSDEGMIKYGFSLVKGKANHPMEDYHVANFINIQDHELGLFAIYDGHMGDSVPAYLQKRLFSNILKEGEFWVDPRRSIAKAYEKTDQAILSNSSDLGRG-GSTAVTAILINGRKLWIANVGDSRAVLSHGGAITQMSTDHEPR--TERSSIEDRGGFVSNLPGDVPRVNGQLAVSRAFGDKGLKTHLSSEPDIKEATVDSQTDVLLLASDGIWKVMTNEEAMEIAR 248          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C14_ARATH (Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.099e-39
Identity = 91/213 (42.72%), Postives = 134/213 (62.91%), Query Frame = 3
Query:   30 GYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFE---NLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV-MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            G  S  GK+  MED + I    V       FGV+DGHGG++AAE++ E+L +    ++++ +   +   A    + +TD DFLE    +    G+   TA++    + V+N+GD R V+ +AG A  L++DHKP R DE++RIE+ GG V    G WRV G+LA+SR+ G+  LK++VVAEPE + LE+++  E LVLASDGLWDVV N++AV
Sbjct:  122 GVVSRNGKKKFMEDTHRIVPCLVGNSKKSFFGVYDGHGGAKAAEFVAENLHKYVVEMMENCKGKEEKVEAFKAAFLRTDRDFLEKGVVS----GACCVTAVIQDQEMIVSNLGDCRAVLCRAGVAEALTDDHKPGRDDEKERIESQGGYVDNHQGAWRVQGILAVSRSIGDAHLKKWVVAEPETRVLELEQDMEFLVLASDGLWDVVSNQEAV 330          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1L_MOUSE (Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 96/218 (44.04%), Postives = 129/218 (59.17%), Query Frame = 3
Query:   39 SFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQ--------QTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI-SKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF--VVAEPEIQDLEVDE-GFELLVLASDGLWDVVPNEDAV 656
            S +G+R  MED +++ T   +     +FG+FDGHGG  AAEY+K  L E L +H Q     K     TYQ          D + LE    +Y + G+T   A+L    L VANVGDSR V+  K G AIPLS DHKP +  ERKRI+ AGG + + G+WRV G+LAMSR+ G+  LK    V+ +P+I   ++D+   E ++LASDGLWD   NE+AV
Sbjct:   97 SIQGRRDHMEDRFEVLTDLANKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQHLQDYEKDKENSVLTYQTILEQQILSIDREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAV 314          
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
P2C59_ORYSJ3.267e-7863.35Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C45_ORYSJ1.372e-7660.18Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C11_ARATH2.051e-7258.99Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
P2C17_ARATH1.061e-4442.04Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C10_ARATH1.809e-4444.25Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C32_ORYSJ2.704e-4044.07Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
P2C62_ORYSJ4.612e-4043.64Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C09_ARATH4.612e-4040.71Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C14_ARATH5.099e-3942.72Probable protein phosphatase 2C 14 OS=Arabidopsis ... [more]
PPM1L_MOUSE1.136e-3844.04Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
back to top