FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C49_ORYSJ (Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 96/250 (38.40%), Postives = 125/250 (50.00%), Query Frame = 3
Query:   24 RCGYSSFRGKRATMEDFYDIKTSNVDGQAVC----MFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDD------------------------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            R G +S  G+R  MED   I+   + G         FGVFDGHG S  A   ++ + E ++   +     K A +      DV     E+   R D                              GSTA  A++  N + VAN GDSR V+ +AG  +PLS DHKP+R DE +RI+ AGG V+ W G  RV GVLAMSRA G+  LK +V +EPE+   E  +  E L+LASDGLWDVV NE A  + R
Sbjct:   91 RYGVTSVFGRRREMEDAVSIRPDFLRGSTSSGKHHFFGVFDGHGCSHVARMCQDRMHELVVDAYKKAVSGKEAAAAAPAWKDV----MEKGFARMDDEATIWAKSRTGGEPACRCELQTPARCDHVGSTAVVAVVGPNRVVVANSGDSRAVLCRAGVPVPLSVDHKPDRPDELERIKAAGGRVIYWDGA-RVLGVLAMSRAIGDGYLKPYVTSEPEVTVTERADDDECLILASDGLWDVVTNEMACEVVR 335          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 93/259 (35.91%), Postives = 131/259 (50.58%), Query Frame = 3
Query:   30 GYSSFRGKRATMEDFYDIKT-----------SNVDGQAVCM-------FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT--KLAISETYQ-QTDVDFLES------------------------ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            G  S +G R+ MED + +              + +G +  +       FGV+DGHGG + A+Y ++ L   L +  + + D   K    E  Q Q D  F                           E       GSTA  A++  +H+ V+N GDSR V+ +  +A+PLS DHKP+R DE  RIENAGG V+ W G  RV GVLAMSR+ G+R LK +V+ EPE+  +      E L+LASDGLWDV+ N++   +AR
Sbjct:  191 GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGA-RVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIAR 448          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C31_ARATH (Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.942e-30
Identity = 84/227 (37.00%), Postives = 126/227 (55.51%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDF---LESERDTYR------DDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMW-AGTWRVGGV-LAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            + CG  +  G+R +MED + I     + +++ +F +FDGH G+ AAE+  + L    L      T    A+S+ + +TD+ F   L+S R + R        G TA  ++LV N L+VANVGDSR ++ +AG    LS+ H     DER R+   GG + W   TWRV    L ++R+ G+  LK  V AEPEI +  +    E LV+ASDGLWDV+ +E+ + + R
Sbjct:  391 ISCGSFATCGRRESMEDTHFIIPHMCNEESIHLFAIFDGHRGAAAAEFSAQVLPG--LVQSLCSTSAGEALSQAFVRTDLAFRQELDSHRQSKRVSQKDWHPGCTAIASLLVENKLFVANVGDSRAILCRAGHPFALSKAHLATCIDERNRVIGEGGRIEWLVDTWRVAPAGLQVTRSIGDDDLKPAVTAEPEISETILSADDEFLVMASDGLWDVMNDEEVIGIIR 615          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1E_RAT (Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm1e PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 70/186 (37.63%), Postives = 105/186 (56.45%), Query Frame = 3
Query:   99 DGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            D +    F VFDGHGG  AA Y   HL  NL++   F  D   A+   ++ TD  F++         G+T     + GN L+VA VGDS+ ++ + G+A+ L + HKP+R DE++RIE  GG V+W G WRV G L++SRA G+   K ++  + +     +D   + L+LA DG +D V  ++AV
Sbjct:  259 DQEEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAV 444          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 70/186 (37.63%), Postives = 105/186 (56.45%), Query Frame = 3
Query:   99 DGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            D +    F VFDGHGG  AA Y   HL  NL++   F  D   A+   ++ TD  F++         G+T     + GN L+VA VGDS+ ++ + G+A+ L + HKP+R DE++RIE  GG V+W G WRV G L++SRA G+   K ++  + +     +D   + L+LA DG +D V  ++AV
Sbjct:  259 DQEEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAV 444          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C24_ARATH (Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 90/236 (38.14%), Postives = 124/236 (52.54%), Query Frame = 3
Query:   24 RCGYSSFRGKRATMEDFYDIKTSNVDGQ----AVCMFGVFDGHGGSRAAEYLKEHLF----ENLLKHPQFMTDTKLAISETYQQTDVDFL-------------ESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            R G SS  G+R  MED   I  S    +        FGV+DGHG S  A   +E L     E L    +   + K  +  ++ + D + +             + +       GSTA  +++  + + VAN GDSR V+ + GK +PLS DHKP+R DE  RIE AGG V++    RV GVLAMSRA G+  LK +V  EPE+   +  +  + L+LASDGLWDVV NE A ++AR
Sbjct:   77 RYGVSSVCGRRREMEDAVAIHPSFSSPKNSEFPQHYFGVYDGHGCSHVAARCRERLHKLVQEELSSDMEDEEEWKTTMERSFTRMDKEVVSWGDSVVTANCKCDLQTPACDSVGSTAVVSVITPDKIVVANCGDSRAVLCRNGKPVPLSTDHKPDRPDELDRIEGAGGRVIYWDCPRVLGVLAMSRAIGDNYLKPYVSCEPEVTITDRRDD-DCLILASDGLWDVVSNETACSVAR 311          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.313e-30
Identity = 89/235 (37.87%), Postives = 121/235 (51.49%), Query Frame = 3
Query:   12 DGKLRCGYSSFRGKRATMEDFY----DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT-KLAISETYQQTDVDFLESERDTYRD-DGSTASTAILVGNH-LYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRML---------KQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            D  L  G S  +G R +MED +    +   SN        FGVFDGHGG R A+Y ++HL + +   P F       A+   +   D + L  +RD   D  G TA+TA++V +  +Y AN GDSRTV+ + G A PLS DHKPN   E+ RI  AGG + +    RV G LA+SRA G+            KQ V A P++    +D   E L+LA DG+WD   ++  V   R
Sbjct:   19 DRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAAD-NALMQDRDMQEDPSGCTATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFDHKPNNDVEKARITAAGGFIDFG---RVNGSLALSRAIGDFEYKKDSSLPPEKQIVTAFPDVVIHNIDPDDEFLILACDGIWDCKSSQQVVEFVR 249          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C77_ORYSJ (Probable protein phosphatase 2C 77 OS=Oryza sativa subsp. japonica GN=Os12g0198200 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.313e-30
Identity = 91/236 (38.56%), Postives = 121/236 (51.27%), Query Frame = 3
Query:   36 SSFRGKRATMEDFYDIKTSNV--DGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT----------------------DTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI-SKAGKAIPLSEDHKPNRCDERKRIENAGGVVM--WAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQ--DLEVDEGFELLVLASDGLWDVVPNEDAV 656
            +S RG R  MED Y + T +    G  +  +GV+DGHGG  A +++ + L +N++      T                      D   AI   Y  TD +FL          G+ A+TA++    LYV+NVGD R V+ S+ G A  L+ DH P R DER RIE+ GG V    +G WRV   LA+SRAFG+  +KQ+V  EPE     L  D     LVLASDGLW  V N++AV
Sbjct:  141 ASRRGVRHAMEDGYGVITRHKIEGGSQLAFYGVYDGHGGRAAVDFVADKLGKNVVTAAAAATTMSRHQAAGSSSPSQQRREEEDDVTAAIRAAYLTTDSEFLSQGVR----GGACAATALVKDGELYVSNVGDCRAVLGSRGGVATALTSDHTPGREDERLRIESTGGYVSCGGSGVWRVQDSLAVSRAFGDAGVKQWVTCEPETARVSLAADGDCRFLVLASDGLWCKVSNQEAV 372          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.326e-30
Identity = 69/186 (37.10%), Postives = 105/186 (56.45%), Query Frame = 3
Query:   99 DGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            D +    F VFDGHGG  AA Y   HL  NL++   F  D   A+   ++ TD  F++         G+T     + GN L+VA VGDS+ ++ + G+A+ L + HKP+R DE++RIE  GG ++W G WRV G L++SRA G+   K ++  + +     +D   + L+LA DG +D V  ++AV
Sbjct:  273 DQEEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCIVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAV 458          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C68_ORYSJ (Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica GN=Os09g0325700 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 90/245 (36.73%), Postives = 131/245 (53.47%), Query Frame = 3
Query:   24 RCGYSSFRGKRATMEDFYDIK---TSNVDGQAVC----MFGVFDGHGGSRAAEYLKEHLFENLL------------KHPQFMTDTKLAISETYQQTDVDFL---ESERDTYRDDG-------STASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            R G +S  G+R  MED   ++    +  +G+        +GVFDGHG S  A+  +E + E +             + P   T+T   +  ++ + D + +    +E  + R +G       STA  A++  + + VAN GDSR V+ + G  + LS DHKP+R DE +RIE AGG V+ W G  RV GVLAMSR+ G+  LK +V A PE+      +  E L+LASDGLWDVV NE A  +A+
Sbjct:   74 RHGAASVAGRRREMEDAVSLREAFAAPANGEVAAARCDFYGVFDGHGCSHVADACRERMHELVAEEMGAGSPAAAAREPASWTET---MERSFARMDAEVIAGCRAESGSCRCEGQKCDHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGAPVQLSSDHKPDRPDELERIEAAGGRVIFWEGA-RVLGVLAMSRSIGDAYLKPYVTAVPEVTVTGRSDFDECLILASDGLWDVVSNEAACEVAQ 314          
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
P2C49_ORYSJ1.487e-3038.40Probable protein phosphatase 2C 49 OS=Oryza sativa... [more]
P2C16_ARATH1.487e-3035.91Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
P2C31_ARATH1.942e-3037.00Protein kinase and PP2C-like domain-containing pro... [more]
PPM1E_RAT2.536e-3037.63Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm... [more]
PPM1E_MOUSE2.536e-3037.63Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
P2C24_ARATH2.536e-3038.14Probable protein phosphatase 2C 24 OS=Arabidopsis ... [more]
PP2C2_SCHPO3.313e-3037.87Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]
P2C77_ORYSJ3.313e-3038.56Probable protein phosphatase 2C 77 OS=Oryza sativa... [more]
PPM1E_HUMAN4.326e-3037.10Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]
P2C68_ORYSJ7.380e-3036.73Probable protein phosphatase 2C 68 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
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