FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.247e-29
Identity = 80/231 (34.63%), Postives = 128/231 (55.41%), Query Frame = 3
Query:   24 RCGYSSFRGKRATMEDFY---DIKTSNVDGQAVC-----MFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRD--DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQ------FVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            R G  + +G +  MED +   D   +++     C      +GVFDGHGG+ AA ++++++   +++   F    K AI   + + D +F +   D+  D   G+TA TA + G  L +AN GD R V+ + G+AI LS+DHKPN   E+ RIE  GGVV       + G L+++RA G+  +K        +  EPE+Q+ ++ E  E L++  DGLWDV+ ++ AV +AR
Sbjct:   84 RSGSCAEQGAKQFMEDEHICIDDLVNHLGAAIQCSSLGAFYGVFDGHGGTDAAHFVRKNILRFIVEDSSFPLCVKKAIKSAFLKADYEFAD---DSSLDISSGTTALTAFIFGRRLIIANAGDCRAVLGRRGRAIELSKDHKPNCTAEKVRIEKLGGVVY---DGYLNGQLSVARAIGDWHMKGPKGSACPLSPEPELQETDLSEDDEFLIMGCDGLWDVMSSQCAVTIAR 308          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.247e-29
Identity = 80/213 (37.56%), Postives = 117/213 (54.93%), Query Frame = 3
Query:  120 FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYR--DD---------------------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            FGV+DGHGG++ A+Y  + +   L +  + + + +L    T +   V + +   D Y   DD                           GSTA  A++  +H+ V+N GDSR V+ +   ++PLS DHKP+R DE  RIE AGG V+ W G  RV GVLAMSR+ G++ L+ FV+ +PE+  +      E L+LASDGLWDV+ N++A   AR
Sbjct:  238 FGVYDGHGGAQVADYCHDRIHSALAEEIERIKE-ELCRRNTGEGRQVQWEKVFVDCYLKVDDEVKGKINRPVVGSSDRMVLEAVSPETVGSTAVVALVCSSHIIVSNCGDSRAVLLRGKDSMPLSVDHKPDREDEYARIEKAGGKVIQWQGA-RVSGVLAMSRSIGDQYLEPFVIPDPEVTFMPRAREDECLILASDGLWDVMSNQEACDFAR 448          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C27_ORYSJ (Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica GN=Os02g0799000 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.159e-29
Identity = 80/234 (34.19%), Postives = 126/234 (53.85%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFY--------DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLES-ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF---------VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            +R G  S  G R  MED +        +   ++VD + +  +GVFDGHGG  AA Y++++L   +++   F  + +  +  ++ QTD  F E          G+TA TA++ G  L VAN GD R V+S+ G AI +S+DH+    +ERKRIE+ GG V       + G LA++RA G+  L+           + AEPE++ + + +  E L++ SDG+WD   N++AV   R
Sbjct:   53 IRSGDWSDIGGRDYMEDAHVCISDLANNFGHNSVDDEIISFYGVFDGHGGKDAAHYVRDNLPRVIVEDADFPLELEKVVRRSFVQTDSQFAERCSHQNALSSGTTALTAMIFGRSLLVANAGDCRAVLSRRGTAIEMSKDHRTCCLNERKRIESLGGYV---DDGYLNGQLAVTRALGDWHLEGLKEVGEPGGPLSAEPELKMITLTKEDEFLIIGSDGIWDFFSNQNAVDFTR 283          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C53_ORYSJ (Probable protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica GN=Os05g0592800 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.392e-28
Identity = 88/254 (34.65%), Postives = 126/254 (49.61%), Query Frame = 3
Query:   30 GYSSFRGKRATMED-------FYDIKTSNVDGQAVC-------------MFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT---------------KLAISETYQQTDVDF---LESERDTYRDD--GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            G  S  G+R  MED       F+D+    V G A                F V+DGHGG + A Y ++ +   L +  +   D                + A  + + + D +      S       D  GSTA  A++  +H+ VAN GDSR V+ +  + +PLS DHKPNR DE  RIE  GG V+ W G +RV GVLAMSR+ G++ LK +++  PE+  +   +  + L+LASDGLWDV+ NE+    AR
Sbjct:  126 GLESICGRRPEMEDDYAVVPRFFDLPLWMVAGDAAVDGLDRASFRLPAHFFAVYDGHGGVQVANYCRKRIHAVLTEELRRAEDDACGSDLSGLESKKLWEKAFVDCFSRVDAEVGGNAASGAPPVAPDTVGSTAVVAVVCSSHVIVANCGDSRAVLCRGKQPLPLSLDHKPNREDEYARIEALGGKVIQWNG-YRVLGVLAMSRSIGDKYLKPYIIPVPEVTVVARAKDDDCLILASDGLWDVMSNEEVCDAAR 378          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.100e-28
Identity = 83/225 (36.89%), Postives = 117/225 (52.00%), Query Frame = 3
Query:   30 GYSSFRGKRATMEDFYDIKTS---NVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN--------RMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            G SS +G R +MED +    S   +     V  F V+DGHGG + A++   +L + L K+P F   D   A+  ++   D   L+ ++      G TA+  + VGN LY AN GDSRTV+   G A PLS DHKP+   E+ RI  AGG V +    RV G LA+SRA G+           KQ V A P++   E+ +  E +VLA DG+WD   ++  +   R
Sbjct:   25 GLSSMQGWRISMEDAHSAILSMECSAVKDPVDFFAVYDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHTDPSGCTATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSADHKPSNEAEKARICAAGGFVDFG---RVNGNLALSRAIGDFEFKNSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVR 246          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C43_ARATH (Probable protein phosphatase 2C 43 OS=Arabidopsis thaliana GN=At3g17250 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.021e-28
Identity = 74/206 (35.92%), Postives = 120/206 (58.25%), Query Frame = 3
Query:  111 VCMFGVFDGHGGSRAAEYLKEH----LFENLLKHPQ-------FMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF---------VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            +  +GVFDGHGGS A++Y+KE+     FE+ +           F+ + + +  E Y+  D+  +E ER      G+TA TA+++G HL VANVGD R V+ + GKA+ +S DHK     ER+R+E+ GG   + G +  G  LA++RA G+  +K+F         ++++P+IQ + + E  E L++  DG+WDV+ ++ AV   R
Sbjct:  156 MAFYGVFDGHGGSDASQYIKENAMSLFFEDAVFRQSPSVVDSLFLKELETSHREAYRLADLA-MEDERIVSSSCGTTALTALVIGRHLMVANVGDCRAVLCRKGKAVDMSFDHKSTFEPERRRVEDLGG--YFEGEYLYGD-LAVTRALGDWSIKRFSPLGESLSPLISDPDIQQMILTEEDEFLIMGCDGVWDVMTSQYAVTFVR 357          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C54_ORYSJ (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.178e-27
Identity = 76/233 (32.62%), Postives = 124/233 (53.22%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTS--------NVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF---------VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            +R G  S  G R  MED +   T         +VD +A+  +GVFDGHGG  AA +++++L   +++   F  + +  +  ++   D  F +    T    G+TA TA++ G  L +AN GD R V+S+ G AI +S DH+P    E+ R+E+ GG V       + G+L ++RA G+  L+           + AEPE++ + + +  E L++ SDG+WDV  N++ V  AR
Sbjct:   64 IRSGDWSDIGGRQYMEDTHVCITDLAKNFGYQSVDNEAISFYGVFDGHGGKDAAHFVRDNLPRIIVEDADFPLELEKVVRRSFVHADNQFAK----TTLSSGTTALTAMIFGRTLLIANAGDCRAVLSRCGTAIEMSVDHRPCSLSEKLRVESLGGYV---DDGYLNGLLGVTRALGDWHLEGMKEAGNPGGPLSAEPELKMITLTKDDEFLIIGSDGIWDVFSNQNVVDFAR 289          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.637e-27
Identity = 86/269 (31.97%), Postives = 138/269 (51.30%), Query Frame = 3
Query:   18 KLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESER-----------------------------------DTYRDDG-----------STASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            +LR G +S +G R TMED +      +D +    FGV+DGHGG   +++  +HL   +LK+  + + D   ++ +++ + D + ++ +R                                   DT+ ++G           STA  AI+  + L VAN GDSR V+S+ G+A  LS+DHKP+   E++RI NAGG ++ AG  RV G L ++RA G+  LK         Q V AEPE+  +++ E  E +VLA DG+WD + +++ V
Sbjct:   21 RLRYGLASMQGWRTTMEDAHTA-LPRLD-ECTSFFGVYDGHGGKAVSKFCAKHLHLQVLKNEAYSSGDLATSVLKSFFRMD-EMMKGQRGWRELAELGDKGQKFTGMLEGIIWSPKPGESDKPEDTWTEEGPHSHFPGPTSGSTACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIV-AG--RVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDCMSSQEVV 283          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C49_ARATH (Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.637e-27
Identity = 80/240 (33.33%), Postives = 129/240 (53.75%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMF---------GVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLA---ISETYQQTDVDFLESERDTYRDD------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            +R G  +  G +  MED + I+  ++  Q   +F          VFDGHGG  AA Y++E+      +  QF   ++++   + E        FL+++     D       G+TA TA++ G  L VAN GD R V+ + G+AI +SEDHKP    ER+R+E +GG +   G   +  VLA++RA G+  LK        +++EPEI+ + + E  E LV+  DG+WDV+ +++AV++ R
Sbjct:   77 IRSGSFADIGPKRNMEDEH-IRIDDLSSQVGSLFELPKPSAFYAVFDGHGGPEAAAYVRENAIRFFFEDEQFPQTSEVSSVYVEEVETSLRNAFLQADLALAEDCSISDSCGTTALTALICGRLLMVANAGDCRAVLCRKGRAIDMSEDHKPINLLERRRVEESGGFITNDG--YLNEVLAVTRALGDWDLKLPHGSQSPLISEPEIKQITLTEDDEFLVIGCDGIWDVLTSQEAVSIVR 313          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C2_PARTE (Probable protein phosphatase 2C 2 OS=Paramecium tetraurelia GN=GSPATT00030171001 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 79/226 (34.96%), Postives = 124/226 (54.87%), Query Frame = 3
Query:   36 SSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT-KLAISETYQQTDVDFLESE--------RDTYRDD---GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------RMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 650
            S  +G R TMED +  K   +  Q V +FGVFDGHGG   A+++++H  + LLK+  F     + A+ ET+ + D   +  E        + T  D+   G TA+ A++  N LYVAN GDSRTV+ +      +S DHKP+  +E+ RIE AGG V      RV G L +SRA G+         R+ +Q ++A P+++ +E+    + L+L  DG+++ + + D
Sbjct:   27 SEMQGWRNTMEDAHIHKPDVI--QDVSIFGVFDGHGGREVAQFVEKHFIDELLKNKNFKEQKFEEALKETFLKMDELLVTPEGQKELNQYKATDTDESYAGCTANVALIYKNTLYVANAGDSRTVLCRNNANYDMSVDHKPDNPEEKSRIERAGGFV---SDGRVNGNLNLSRALGDLEYKRDSKLRVNEQLIIAIPDVKKVELGPQDKFLLLGCDGVFETLNHMD 247          
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
P2C27_ARATH6.247e-2934.63Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
P2C07_ARATH6.247e-2937.56Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
P2C27_ORYSJ8.159e-2934.19Probable protein phosphatase 2C 27 OS=Oryza sativa... [more]
P2C53_ORYSJ1.392e-2834.65Probable protein phosphatase 2C 53 OS=Oryza sativa... [more]
PP2C3_SCHPO3.100e-2836.89Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
P2C43_ARATH9.021e-2835.92Probable protein phosphatase 2C 43 OS=Arabidopsis ... [more]
P2C54_ORYSJ1.178e-2732.62Probable protein phosphatase 2C 54 OS=Oryza sativa... [more]
P2C70_ORYSJ7.637e-2731.97Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
P2C49_ARATH7.637e-2733.33Probable protein phosphatase 2C 49 OS=Arabidopsis ... [more]
PP2C2_PARTE1.303e-2634.96Probable protein phosphatase 2C 2 OS=Paramecium te... [more]

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Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
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