FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 57/173 (32.95%), Postives = 87/173 (50.29%), Query Frame = 2
Query:  152 Q*QRKRRAITRILSSFVDMATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            Q +RK  A  +  ++ +   T   L  +  K++ KEL  +   PP     G   D+     + I GP G+ YE GVF + +  S D+P  PPK  F T+I+H NI + G IC++ LK +W+P+L +  VL+ +  LL +  P   L        L N  E+ R AR +T  +A
Sbjct:   35 QEERKPSATQQKKNTKLSSKTTAKLSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 57/173 (32.95%), Postives = 87/173 (50.29%), Query Frame = 2
Query:  152 Q*QRKRRAITRILSSFVDMATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            Q +RK  A  +  ++ +   T   L  +  K++ KEL  +   PP     G   D+     + I GP G+ YE GVF + +  S D+P  PPK  F T+I+H NI + G IC++ LK +W+P+L +  VL+ +  LL +  P   L        L N  E+ R AR +T  +A
Sbjct:   35 QEERKPSATQQKKNTKLSSKTTAKLSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 57/173 (32.95%), Postives = 87/173 (50.29%), Query Frame = 2
Query:  152 Q*QRKRRAITRILSSFVDMATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            Q +RK  A  +  ++ +   T   L  +  K++ KEL  +   PP     G   D+     + I GP G+ YE GVF + +  S D+P  PPK  F T+I+H NI + G IC++ LK +W+P+L +  VL+ +  LL +  P   L        L N  E+ R AR +T  +A
Sbjct:   35 QEERKPSATQQKKNTKLSSKTTAKLSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            K++ KEL  +   PP     G   D+     + I GP G+ YE GVF + +  S D+P  PPK  F T+I+H NI + G IC++ LK +W+P+L +  VL+ +  LL +  P   L        + N  E+ R AR +T  +A
Sbjct:   58 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            K++ KEL  +   PP     G   D+     + I GP G+ YE GVF + +  S D+P  PPK  F T+I+H NI + G IC++ LK +W+P+L +  VL+ +  LL +  P   L        + N  E+ R AR +T  +A
Sbjct:   58 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            ++L ++ K L   PP GI     +++     A I GP  + +E   F++ L  S ++P+  P   FL+K+FHPN+  +G IC++ L+  W+P   +  +L  ++ LL +P P S  N ++ ++  EN  EY R  +
Sbjct:    7 RRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVK 142          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 46/145 (31.72%), Postives = 83/145 (57.24%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            K++ KE++++ + P   I +  V++ D   +     GP GTPYE G F + + +  ++P  PPK  F TK++HPNI++  G IC++ LK  W+P + L+  LI ++ LL  P P    + +  +  L + E + + A ++T ++A
Sbjct:    5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 59/164 (35.98%), Postives = 82/164 (50.00%), Query Frame = 2
Query:  224 LPPNVIKQLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 673
            L P+  K L  ELK L E P EG +V + D+ D       I GP  T YE G F+ +L    D+P+SPP   FLTK++HPNI   G++C++ L              + WNP+  +R +L+ V  LL EP   S  N  A  ++   ++E     R YT I  K
Sbjct:    5 LVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDA-SVMYRKWKESKGKDREYTDIIRK 167          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 59/164 (35.98%), Postives = 82/164 (50.00%), Query Frame = 2
Query:  224 LPPNVIKQLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 673
            L P+  K L  ELK L E P EG +V + D+ D       I GP  T YE G F+ +L    D+P+SPP   FLTK++HPNI   G++C++ L              + WNP+  +R +L+ V  LL EP   S  N  A  ++   ++E     R YT I  K
Sbjct:    5 LVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDA-SVMYRKWKESKGKDREYTDIIRK 167          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  254 KELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI-ATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLE-NYEEYARHARIYTGIHAKPK 679
            KE++    + P+ I++  +D +     A I+GP+ TPYE GVF++   +   +P  PP+  FLTKIFHPN+    GEIC++ LK  W+P+  L+ V   +  L+  P P+S LN  +G +L   +   +   A++YT + A PK
Sbjct:   13 KEVQREKVADPD-IQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPK 155          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
UB2E3_MOUSE2.493e-1832.95Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN2.493e-1832.95Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN2.493e-1832.95Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2E2_MOUSE5.553e-1834.97Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN5.553e-1834.97Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBC2_DICDI7.253e-1830.88Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC1_YEAST1.237e-1731.72Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UB2R1_MOUSE2.110e-1735.98Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN2.110e-1735.98Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC21_ARATH2.756e-1736.11Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
back to top