FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 46/145 (31.72%), Postives = 81/145 (55.86%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEGIKVGV---NDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            + +LA+E K+  +  P G+ V V   N D    +      I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  ++  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPLGL-VAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVR 149          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  233 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 640
            +V+K+L  EL  L      GI     +D+       I G   T +E   +R+ L  S+D+P  PPK  F T  FHPN+   G IC++ L+  W+ +  +R +L+ ++ LL EP   S LN QA + L  N EEY +
Sbjct:   35 SVLKRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQ-LWSNQEEYRK 169          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  365 YENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            Y+ G F+ ++ +  ++PH PPK   L KI+HPNI   G +C+N L++DWNP L L  +L+ ++ L + P  E  LN++A   L ++ + +A   R
Sbjct:   65 YKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 46/136 (33.82%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  236 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARH 643
            V K+L KEL +L  +   GI    + ++       I GP  T Y    +R+ L   + +P++ P   FLT  FHPN+   G IC++ LK  W+    +R +L+ ++ LL EP  ES LN QA  M+  + +EY ++
Sbjct:   33 VSKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAA-MMWNDQKEYKKY 167          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 45/143 (31.47%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  245 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPA-GTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            ++ KE + L   P  GIK   ++ +       I G +  +P+E G F+ +LLL+ ++P + PK  F+TKI+HPN+     I ++ LK  W+P+L +R VL+ ++ LL  P P+  L     +    N  +    AR +T ++A
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYA 149          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  233 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARH 643
            +V K+L +EL +L  S  +GI      D+       I+G  GT YE+  +++ L     +P++ P   F+T  FHPN+ ++G IC++ LK  W+    +R +L+ ++ LL EP  ES LN  A + L +N   Y +H
Sbjct:   30 SVGKRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAE-LWQNQTAYKKH 165          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  233 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHA-RIYTGIHA 670
            +V+K+L  EL  L      GI     +D+       I G   T +E   +R+ L  S+D+P   PK  F T  FHPN+   G IC++ L+  W+ +  +R +L+ ++ LL EP   S LN QA + L  N EEY +   ++Y  ++A
Sbjct:   36 SVLKRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQ-LWSNQEEYRKMVEKLYKPLNA 181          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 45/144 (31.25%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            + +LA+E K+  +  P G + V   + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ +  + I ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKRFR 149          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 53/144 (36.81%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  245 QLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI-ATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLE-NYEEYARHARIYTGIH 667
            +L KE K L     E I +   D+ D     A I+GP  TPYENG F + + +  ++P  PP   F+TKIFHPNI    GEIC++ LK  W+    L+ V   +  LL  P  +S LN  AG ++   + + +   AR+YT ++
Sbjct:    4 RLMKEYKVLQNEEFEDILLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRLY 147          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 32/95 (33.68%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  365 YENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            Y +G F     +  ++PH PPK    T+++HPNI  +G +C+N L++DWNP L +  ++  ++ L +EP PE  LN++A  +L  N  ++  + +
Sbjct:   68 YRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVK 162          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
UBC9_PAGMA1.975e-1531.72SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC20_ARATH1.975e-1535.29Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC12_SCHPO2.580e-1536.84NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2C_DROME4.400e-1533.82Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UE2NL_HUMAN5.747e-1531.47Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2C_XENLA5.747e-1533.58Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBC19_ARATH5.747e-1533.33Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBC9_MESAU7.505e-1531.25SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBCX_DICDI9.802e-1536.81Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC12_DROME1.280e-1433.68NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
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