FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 46/136 (33.82%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  236 VIKQLAKELKSLDESPPEGIKV-GVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 640
            V K+L  EL  L  S  E I    V+D+D +     I GP  TPY    F++ L    ++P  PP   FL+ ++HPN+  +G IC++ LK+ W+    +  +L+ ++ LL EP   S LN  A ++   + EEY +
Sbjct:    9 VTKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRK 144          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKM 610
            K+L +EL +L  S  +GI      D+       I G AGT YE+  +++ L     +P++ P   FLT  +HPN+ T G IC++ LK+ W+    +R +L+ ++ LL EP  +S LN  A ++
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAEL 155          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 48/165 (29.09%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  158 QRKRRAITRILSSFVDMATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARI 652
            Q+K++ + +   S V   TN   P  +  +L K+++ L+  P   + +   D+        I  P    Y+ G FR        +P  PPK     KIFHPNI  +G+IC+N L++DW+P+L L+ +++ +  L  EP     LN++A ++L ++  E+    R+
Sbjct:    9 QQKQQQLAKNAGSSVKANTNSTSPAKL--RLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVRL 171          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKM 610
            K+L +EL +L  S  +GI      D+       I G AGT YE+  +++ L     +P++ P   FLT  +HPN+ T G IC++ LK  W+    +R +L+ ++ LL EP  +S LN  A ++
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAEL 155          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKM 610
            K+L +EL +L  S  +GI      D+       I G AGT YE+  +++ L     +P++ P   FLT  +HPN+ T G IC++ LK  W+    +R +L+ ++ LL EP  +S LN  A ++
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAEL 155          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 47/145 (32.41%), Postives = 71/145 (48.97%), Query Frame = 2
Query:  248 LAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 640
            L K+L  +   P +G   G V+D+D       + GP  T YE G F+  L    D+P  PPK  F+++I+HPNI   G +C++ L             ++ W P   +  +L+ V  +L +P  ES  N  A KM  ENY E+ +
Sbjct:    8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKK 152          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  245 QLAKELKSLDESPPEGI--KVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL--KKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            +LA+E K   +  P G   K   N D    +F     I G   T +E G++R+++L   DFP +PPK  F   +FHPN+  +G +C++ L   KDW PS+ ++ +LI ++ LL  P  E     +A ++  +N  EY +  +
Sbjct:    8 RLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVK 149          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKM 610
            K+L +EL  L  S  +GI      D+       I G AGT YE+  +++ L     +P++ P   FLT  +HPN+ T G IC++ LK  W+    +R +L+ ++ LL EP  +S LN  A ++
Sbjct:   33 KRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAEL 155          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 2
Query:  230 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKD-WNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 673
            P+  ++L KE   L E P   I+V + DD+         GP+ + Y  G F   L    D+P  PP   F T+I+HPN  + G +C+  LK+  + PS+ LR VL  +  LL EP P+  L     +    +   + + AR Y    AK
Sbjct:    6 PSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFAK 154          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 38/130 (29.23%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  263 KSLDESP-PEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            K +DE   P G  V   D +    F     P    Y++  F+  + +   +P+ PPK +  T ++HPNI   G +C+N L++DW P L +  V+  +  L +EP P+  LN+ A +++++N + +  + R
Sbjct:   84 KDIDEMEVPTGCAVSFKDTNDILNFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVR 213          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
UBC11_YEAST1.280e-1433.82Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2C_HUMAN2.184e-1434.15Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC12_CANGA2.184e-1429.09NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBE2C_MACFA3.725e-1434.15Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN3.725e-1434.15Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC7_CAEEL3.725e-1432.41Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC9_CAEEL4.865e-1432.39SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBE2C_MOUSE6.354e-1434.15Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBC14_SCHPO6.354e-1432.21Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC12_DICDI6.354e-1429.23NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
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