FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 36/113 (31.86%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  284 PEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLEN 622
            P+  ++  +D D    F  +  P    Y+ G F     +   +PH PPK    T ++HPNI   G +C+N L++DW P L +  ++  ++ L +EP PE  LN++A ++L  N
Sbjct:   44 PKTCEIEFSDHDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 36/113 (31.86%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  284 PEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLEN 622
            P+  ++  +D D    F  +  P    Y+ G F     +   +PH PPK    T ++HPNI   G +C+N L++DW P L +  ++  ++ L +EP PE  LN++A ++L  N
Sbjct:   44 PKTCEIEFSDHDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 43/152 (28.29%), Postives = 77/152 (50.66%), Query Frame = 2
Query:  245 QLAKELKSLDESPPEGI--KVGVNDDDFSTIFA---DIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKK--DWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPK 679
            +L++E K+     P G   +   N D    ++     I G   T +E GV+ + +  + D+P  PPK  F    FHPN+  +G +C++ L +  DW PS+ ++ VL+ ++ LL  P P+S   +    + L N EEY +  +  + ++  P+
Sbjct:    8 RLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVYPPPQ 159          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 38/136 (27.94%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  296 KVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI-ATNGEICVNTLKKDWNPSLGLRHVL-IVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKFSQE 697
            KV   +DD    +    GP  + Y+ GV+++K+ L   +P+  P   F+ KI+HPN+  ++G +C++ + + W+P   L +V    +  LL+ P P    N +A  +L+ +   Y    + Y   +AKP+   S +
Sbjct:   21 KVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEKYAKPEEILSDD 156          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 36/129 (27.91%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  296 KVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI-ATNGEICVNTLKKDWNPSLGLRHVL-IVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            KV   +D     + +  GP  + Y+ GV+++++ L   +P+  P   F+TKI+HPN+   +G +C++ + + W+P   L +V    +  LL+ P P   LN +A  +++ +   Y +  + Y   +AKP
Sbjct:   21 KVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEKYAKP 149          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 35/130 (26.92%), Postives = 69/130 (53.08%), Query Frame = 2
Query:  296 KVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI-ATNGEICVNTLKKDWNPSLGLRHVL-IVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPK 679
            KV + +D     F    GP  + Y+ GV+++++ L+  +P+  P   F  KI+HPN+   +G +C++ + + W+P   L ++  + +  LL+ P P   LN +A  +++ +   Y    + Y   +AKP+
Sbjct:   21 KVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYAKPE 150          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = 2
Query:  296 KVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI-ATNGEICVNTLKKDWNPSLGLRHVL-IVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKFSQ 694
            +V + +D          GP  TPYENGV+R+ + L  ++P+  P   F+ KIFHPNI   +G IC++ +   W+P   L +++  ++  LL EP     LN +A  + L + + Y    + Y   +A  K K+ Q
Sbjct:   21 QVDLINDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIKEYIDKYA-TKEKYQQ 154          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 42/135 (31.11%), Postives = 63/135 (46.67%), Query Frame = 2
Query:  245 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            +L K++  L+      I      DD       I+   G  Y NG F     +S  +PH  PK    TK++HPNI   G +C+N L++DW P L +  V+  +  L  EP  E  LN  A  +L +N + +  + R
Sbjct:   34 RLHKDISELNLPSSCSISFPNGKDDLMNFEVSIKPDDGY-YHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVR 167          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 47/161 (29.19%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  215 NENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK-----IFHPNIATNGEICVNTL----KKDWNPSLGLRHVLIVVRCLLIE-PF-PESALNEQAGKMLLENYEEYARHARIYTGI 664
            NE      + ++ +++ S+ + PP G+ V  +  D + I A I GP  TPYE G F        D+P  PP+   +T       F+PN   NG++C++ L       W+P+  L  VLI ++ L+ E P+  E    ++      +NY E  RH  I   +
Sbjct:   52 NERASTQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERHSGDSKNYNECIRHETIRVAV 212          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 47/161 (29.19%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  215 NENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK-----IFHPNIATNGEICVNTL----KKDWNPSLGLRHVLIVVRCLLIE-PF-PESALNEQAGKMLLENYEEYARHARIYTGI 664
            NE      + ++ +++ S+ + PP G+ V  +  D + I A I GP  TPYE G F        D+P  PP+   +T       F+PN   NG++C++ L       W+P+  L  VLI ++ L+ E P+  E    ++      +NY E  RH  I   +
Sbjct:   52 NERASNQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERHSGDSKNYNECIRHETIRVAV 212          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
UBC12_XENTR1.849e-1331.86NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA1.849e-1331.86NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC9_DICDI4.118e-1328.29Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC6_ARATH5.379e-1327.94Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC4_ARATH9.175e-1327.91Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC4_WHEAT1.198e-1226.92Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC8_YEAST2.044e-1231.85Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
RCE1_ARATH2.669e-1231.11NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBE2Z_XENLA5.947e-1229.19Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_XENTR7.767e-1229.19Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
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