FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.819e-54
Identity = 96/150 (64.00%), Postives = 118/150 (78.67%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIH 667
            ENLPP++I+ + KE+ +L   PP+GIKV  N++D + +   IEGP GTPY  G+FRMKLLL  DFP SPPKGYFLTKIFHPN+  NGEICVN LK+DW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  AR+ T IH
Sbjct:    6 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 155          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 96/150 (64.00%), Postives = 118/150 (78.67%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIH 667
            ENLPP++I+ + KE+ +L   PP+GIKV  N++D + +   IEGP GTPY  G+FRMKLLL  DFP SPPKGYFLTKIFHPN+  NGEICVN LK+DW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  AR+ T IH
Sbjct:    6 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 155          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 96/150 (64.00%), Postives = 118/150 (78.67%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIH 667
            ENLPP++I+ + KE+ +L   PP+GIKV  N++D + +   IEGP GTPY  G+FRMKLLL  DFP SPPKGYFLTKIFHPN+  NGEICVN LK+DW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  AR+ T IH
Sbjct:    6 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 155          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 96/150 (64.00%), Postives = 118/150 (78.67%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIH 667
            ENLPP++I+ + KE+ +L   PP+GIKV  N++D + +   IEGP GTPY  G+FRMKLLL  DFP SPPKGYFLTKIFHPN+  NGEICVN LK+DW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  AR+ T IH
Sbjct:    6 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 155          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.810e-51
Identity = 91/151 (60.26%), Postives = 115/151 (76.16%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            ENLPP V++ + KE+ +L   PPEGIK+  +++D + +   IEGP GTPY  GVFRM+L+L  DFP  PP+GYFLTKIFHPN+   GEICVN LK+DW   LGLRHVL+ ++CLLI P PESALNE+AGK+LLE+Y+EYA  A + T IHA
Sbjct:    6 ENLPPQVLRLVYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHA 156          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.385e-50
Identity = 88/153 (57.52%), Postives = 119/153 (77.78%), Query Frame = 2
Query:  212 TNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            ++ENLPP+VIK++ KELK L+ S  EGI +   ++D + I A + GPAGTPYE G F+ +L+LS DFP SPPK  F+TKIFHPN++  GEICVNTLKKDW   LGL+H+L+ ++CLLI P  ES+LNE A ++LLENY++Y +HA+++T IHA
Sbjct:    2 SSENLPPDVIKRVVKELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCKHAKLFTSIHA 154          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPK 685
            K++ KE + L   P  GI    +DD+       IEGP  +PYE+G+F ++L L  D+P   PK  FLTKI+HPNI   G IC++ LK +W+P+L +R VL+ ++ LL  P P   L     +  ++N +     AR +T ++AK KP+
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKKPE 153          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            K++ KE+++L   PP GI     +D+       +EGP  + YE G F ++L L  ++P  PP   FLTKI+HPN+   G IC++TLKKDW+P+L +R VL+ ++ L+  P P+  L+    K+  EN  +   +AR +T  +A
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 54/147 (36.73%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  233 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            N  +++AKEL  + +    GI+V   +DD S +     GP GTPYE G F + + +  D+P  PPK  F TKI+HPN+++  G IC++ LK  W+P   ++  LI ++ LL  P P +  + Q  ++ L+NY+++ R AR +T  +A
Sbjct:    4 NRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 48/133 (36.09%), Postives = 81/133 (60.90%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 640
            ++L ++ K L E PP G+    ++++     A I GP GTP+E+G F++ +  S ++P+ PP   FL+K+FHPN+  +G IC++ L+  W+P+  +  +L  ++ LL EP P S  N QA ++  EN  EY +
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
UBE2S_BOVIN2.819e-5464.00Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBE2S_RAT3.682e-5464.00Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]
UBE2S_MOUSE3.682e-5464.00Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UB2SA_XENLA3.682e-5464.00Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBE2S_DANRE3.810e-5160.26Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBE2S_DICDI9.385e-5057.52Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBC13_YEAST6.125e-2538.51Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC13_SCHPO2.328e-2437.76Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC1_SCHPO3.361e-2336.73Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBE2B_RAT5.733e-2336.09Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
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