FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            K++AKEL  L+  PP     G   DD     A I GPA +PY  GVF + +    D+P  PPK  F TKI+HPNI  NG IC++ LK  W+P+L L  VL+ +  LL +  P+  L  +   +   +  +Y   AR +T  +A
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            +K++ KEL  L   PP     G   DD     A I GP  +PY+ GVF + +    D+P  PPK  F TKI+HPNI +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +       + E+Y R AR +T  +A
Sbjct:    3 LKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYA 146          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            +K++ KEL+ L   PP     G   DD     A I GP  +PY+ GVF + +    D+P  PPK  F T+I+HPNI +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + E+Y   AR +T  +A
Sbjct:    3 LKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 146          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 50/136 (36.76%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            ++L ++ K L    P GI    N D+     A I GP  TP+E+G FR+ L  +  +P+ PP   F++K+FHPNI  NGE+C++ L+  W+P+  +  +L  V+ LL +P P S  N  A ++  EN +EY R  +
Sbjct:    7 RRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVK 142          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            +K++ KEL+ L   PP     G   DD     A I GP  +PY+ GVF + +    D+P  PPK  F T+I+HPNI +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + E Y + AR +T  +A
Sbjct:    3 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 52/157 (33.12%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKD----WNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKFSQE 697
            + +L +EL+ L++ PP G+    N+ +   + A I G +G+PYE G+F +++++   +P  PPK  FLT I+HPNI + G IC++ LK      W P+L +  VL  ++ L+ EP P+  L          N   +  +A+ +T  HA P P+ S +
Sbjct:    4 VSRLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHALPAPQGSDK 160          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  245 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKD----WNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKFSQE 697
            +L KEL  L   PP GI      D  + + A I G A TPYE GVF +++++   +P  PP+  FLT I+HPNI ++G IC++ LK      W PSL +  VL  ++ L+ EP P+  L          N   + + A+ +T  HA+ K K  +E
Sbjct:    6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHARQKQKADEE 160          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            +++ KELK L   PP     G   +D     A I GP  +PY  GVF + +    D+P  PPK  F TK+FHPNI +NG IC++ LK  W+P+L +  VL+ +  LL +P P+  L  +   +   +  +Y   AR +T  +A
Sbjct:    4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYA 146          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 44/136 (32.35%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            ++L ++ K L E PP G+     D++     A I GP  TP+E+G F++ +  + ++P+ PP   F++K+FHPN+  +G IC++ L+  W+P+  +  +L  ++ LL +P P S  N  A ++  EN  EY +  +
Sbjct:    7 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVK 142          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 51/144 (35.42%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            +K++ KEL  L   PP     G   DD     A I GP  +PY+ GVF + +    D+P  PPK  F T+I+HPNI +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + ++Y R +R +T  +A
Sbjct:    3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
UBC4_YEAST1.081e-2138.46Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UB2D4_HUMAN1.081e-2137.50Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBCD1_DROME1.412e-2136.11Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_CRYNE1.412e-2136.76Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC2_CAEEL1.412e-2136.11Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBE2T_XENLA2.409e-2133.12Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBE2T_MOUSE2.409e-2136.13Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC29_ARATH2.409e-2136.36Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBCD6_DROME4.109e-2132.35Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D3_RAT4.109e-2135.42Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
back to top