FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            +K++ KEL  L + PP     G   +D     A I GP  +PY+ G F + +    ++P  PPK  F T+I+HPN+ +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + ++Y R AR +T  +A
Sbjct:    3 LKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            +K++ KEL  L + PP     G   +D     A I GP  +PY+ G F + +    ++P  PPK  F T+I+HPN+ +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + ++Y R AR +T  +A
Sbjct:    3 LKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 44/136 (32.35%), Postives = 76/136 (55.88%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            ++L ++ K + E  P G+      D+     A I GPA TPYE+G FR+ L    ++P+ PP   FL+++FHPN+  NGEIC++ L+  W P+  +  +L  ++ L  +P P S  N +A  +  ++  +Y +  +
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVK 142          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 47/143 (32.87%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            +++ KE + L   P  GIK   ++ +       I GP  +P+E G F+++L L  ++P + PK  F+TKI+HPN+  +G IC++ LK  W+P+L +R VL+ ++ LL  P P+  L     +    N  +    AR +T ++A
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 44/136 (32.35%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            ++L ++ K +   PP G+      D+  T  A I GPA TP+E+G FR+ +     +P+ PP   F++++FHPN+   GE+C++ L+  W+P+  +  VL  ++ LL +P   S  N +A  +  +N +EY +  R
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVR 142          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 48/144 (33.33%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 673
            K++ +E+  L+  PP     G   D+     A I GP+GTPYE G+F + ++   D+P  PPK  F T+I+H N+ T G++ VN L+  W+P+L +  VL  +R + ++P P S       ++ L + E++   A+ +T   AK
Sbjct:   39 KRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFAK 182          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  239 IKQLAKELKSLDESPPEGIKVGV-NDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            +++L KE K L E+ P+GI  G  N+DDF T    I+GP GTP+E G++   L    D+P  PP   F  + FHPN+  +G +C++ L              + W+P   +  +L+ V  +L EP  ES  N  A KM  E+ EEY R  R
Sbjct:    7 LRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVR 157          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            +++ KE + L   P  GIK   ++ +       I GP  +P+E G F+++L L  ++P + PK  F+TKI+HPN+   G IC++ LK  W+P+L +R VL+ ++ LL  P P+  L     +    N  +    AR +T ++A
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYA 148          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 49/151 (32.45%), Postives = 88/151 (58.28%), Query Frame = 2
Query:  221 NLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            N+    IK+  KE+   +E+    IKV + D++F+ +  +I GP  TPYE G +++++ +   +P +PPK  F+TKI+HPNI++  G IC++ LK  W  ++ LR VL+ ++ LL    P+   +        +N E + + AR++  ++A
Sbjct:    3 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 49/151 (32.45%), Postives = 88/151 (58.28%), Query Frame = 2
Query:  221 NLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 670
            N+    IK+  KE+   +E+    IKV + D++F+ +  +I GP  TPYE G +++++ +   +P +PPK  F+TKI+HPNI++  G IC++ LK  W  ++ LR VL+ ++ LL    P+   +        +N E + + AR++  ++A
Sbjct:    3 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
U2D2B_RAT2.663e-2033.33Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE2.663e-2033.33Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC2_KLULA3.478e-2032.35Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBE2N_MACFA5.933e-2032.87Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC2_NEUCR5.933e-2032.35Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
COP10_ARATH7.749e-2033.33Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC7_SCHPO1.012e-1936.42Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBE2N_RAT1.322e-1932.87Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2K_MOUSE1.322e-1932.45Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN1.322e-1932.45Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
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