FC875581

Overview
NameFC875581
Unique NameFC875581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38
Identity = 91/179 (50.84%), Postives = 118/179 (65.92%), Query Frame = 3
Query:  174 TTHSFPTQCSTKRLDVAEFAGLR----------ANAGATYATGARDAS--FFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +T S    CS  R   A+F+GL+          A  G+ +  G  DA+  FF+AV     P   + +  +K      ++VAINGFGRIGRNF+RCW GR DS +DVV +ND+ GVK ASHLLKYDS+LGTF +DV +   ++I+VDGK IKVVSNR+PL+LPW E+ IDIV+E TGVFV
Sbjct:   12 STSSKSAVCSG-RSSFAQFSGLKKVNNTARLQTAEQGSAFG-GVSDANDAFFNAVNTMGAPARTSNAPSMK------VRVAINGFGRIGRNFIRCWAGRTDSNMDVVCINDTSGVKTASHLLKYDSILGTFDSDV-VAGEDSITVDGKTIKVVSNRNPLELPWKEMEIDIVVEATGVFV 181          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.792e-38
Identity = 86/162 (53.09%), Postives = 110/162 (67.90%), Query Frame = 3
Query:  210 RLDVAEFAGLRANAGATYATGARDASFF-------DAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            R   A+F+G++    ++    A+  S F       DA   +++  VAA   P  K     ++VAINGFGRIGRNF+RCW GR DS ++VV +ND+ GVK ASHLLKYDS+LGTF ADV     +TISV+GK IK+VSNR+PLQLPW E+ IDIV+E TGVFV
Sbjct:   24 RSTFAQFSGMKKVNQSSRLQPAQSGSAFGGYSDANDAFYTRVSGIVAATFGPTMK-----VRVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTSGVKTASHLLKYDSILGTFDADVS-AGEDTISVNGKTIKIVSNRNPLQLPWKEMNIDIVVEATGVFV 179          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.578e-34
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 3
Query:  384 NGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            NGFGRIGRNFLRC   R++S L+V+ +NDSGGVK ASHLLKYDS LG F ADVKIVD+  ISV+GK I+VVS+RDP +LPW E+ ID+VIEGTGVF+
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSGGVKQASHLLKYDSTLGKFDADVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFI 97          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.282e-29
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 3
Query:  372 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +VAINGFGRIGRNFLRCW GR DS L+VV +ND+   +  +HLL+YDS+LG   AD+   D  +I+V+GK IK VS+R+PL LPWAE  +D+VIE TGVFV
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGINDTSDPRTNAHLLRYDSMLGKLDADIS-ADENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFV 102          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            ++VAINGFGRIGRNF RCW GR+++ +++V VND+   +  +HLLKYDS+LG  K      D+ +I+V+GK IK VS+R+P  LPW E  ID++IE TGVFV
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENTNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIEATGVFV 103          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 56/101 (55.45%), Postives = 75/101 (74.26%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            ++VAINGFGRIGRNF RCW GR++S +++V VND+   +  +HLLKYDS+LG  K      D+ +I+V+GK IK VS+R+P  LPW E  ID++IE TGVF
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIESTGVF 102          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            ++V INGFGRIGRN+ R     + + +++V VND G     +HLLKYD++LG  KA+V   + +TI+VDGK IKV+S R+P  +PW ELG+DIVIE TG+F
Sbjct:    3 IRVGINGFGRIGRNYFRALL-EQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVSHTE-DTITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIF 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR+F R   GR++  +++V +ND    K+ +HLLKYDS+ G FK  V+  D ++I VDGK IKV + +DP Q+PW +LG+D+VIE TGVF
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKD-DSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.088e-20
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +K+AINGFGRIGRN  +    R    +D+V +ND    K  +HLLKYDS  G +   V+  D   I VDG+ IK+++ RDP  LPWA+LGID+VIE TGVF
Sbjct:    1 MKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDG-AIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVF 97          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.421e-20
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  372 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +VAINGFGRIGR   R  + RK+  ++VV +ND    K  +HLLKYDS+   F   V+  +N  I VDGK IKV +  DP +LPW +LG+D VIE TGVF
Sbjct:    3 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLI-VDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVF 101          
The following BLAST results are available for this feature:
BLAST of FC875581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
G3PA_GRAVE2.577e-3850.84Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_CHOCR9.792e-3853.09Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_SCEVA8.578e-3471.13Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_SYNY31.282e-2961.39Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P2_ANASP2.263e-2654.90Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANAVT2.955e-2655.45Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_STRCO1.051e-2352.48Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_AQUAE1.051e-2353.47Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3P_BORBU1.088e-2051.49Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P_THEMA1.421e-2052.00Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionC31405E06EF CTVClemen1 Citrus clementina cDNA clone C31405E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875581 ID=FC875581; Name=FC875581; organism=Citrus clementina; type=EST; length=674bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTG
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