FC875581

Overview
NameFC875581
Unique NameFC875581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +K+ INGFGRIGR   R    R++  ++VV +ND    K  +++LKYDS  G FK D+++ +N  I ++GK I++ S +DP +L W +L ID+VIE TG+F+
Sbjct:    3 IKIGINGFGRIGRVLFRLAQEREN--IEVVAINDLLDPKYIAYMLKYDSTHGNFKKDIEVKNNNLI-INGKKIRITSIKDPEKLMWDKLLIDVVIESTGLFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KVAING G+IGR  +R    R +  ++VV +ND    V  A+++ KYDS  G +  DV+   N T+ +DGK IKV   RDP QLPW E GIDI I+ TGVF
Sbjct:    2 VKVAINGLGKIGRLVMRIALSRAN--VEVVAINDPFITVDYAAYMFKYDSTHGKYAGDVQYEGN-TLVIDGKKIKVFQERDPAQLPWGEEGIDIAIDSTGVF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +KV INGFGRIGR   R    +K S +++V +ND       +++LKYDS  G F   V++ D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +KV INGFGRIGR   R    +K S +++V +ND       +++LKYDS  G F   V++ D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +KV INGFGRIGR   R    +K S +++V +ND       +++LKYDS  G F   V++ D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +KV INGFGRIGR   R    +K S +++V +ND       +++LKYDS  G F   V++ D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGRN  R      +  ++VV VND       +HLL+YDS+ G   A+V  VD   + V+GK I+V + RDP +L W + G++IV+E TG F
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALNNPEVEVVAVNDLTDANMLAHLLQYDSVHGKLDAEVS-VDGNNLVVNGKTIEVSAERDPAKLSWGKQGVEIVVESTGFF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +K+ INGFGRIGR   R    R D  ++VV +ND   V+  +++LKYDS  G F   V++ D   + V+GK I+V + RDP  L W  +G+DI +E TG+F+
Sbjct:    3 IKIGINGFGRIGRIVFRAAQHRDD--IEVVGINDLIDVEYMAYMLKYDSTHGRFDGTVEVKDGNLV-VNGKTIRVTAERDPANLNWGAIGVDIAVEATGLFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  372 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            K+AINGFGRIGR  LR     +   L+VV +ND    K  +HL KYDS  G F  ++++ +   + V+GK +KV +  DP +LPW +LGID+V+E TG F
Sbjct:    3 KIAINGFGRIGRLALR--RILEVPGLEVVAINDLTDAKMLAHLFKYDSSQGRFNGEIEVKEGAFV-VNGKEVKVFAEADPEKLPWGDLGIDVVLECTGFF 99          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: E4PD_PROMH (D-erythrose-4-phosphate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=epd PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            ++VAINGFGRIGRN LR  +   K + + VV +N+       +HLLKYDS  G F  D++ V+N+ + V    I++  + D   LPW ELGID+V++ +GV+
Sbjct:    3 IRVAINGFGRIGRNVLRALYESGKRAEISVVAINELADATGIAHLLKYDSSHGRFAWDIR-VNNDLLQVGDDAIRLFHHADIADLPWGELGIDVVLDCSGVY 103          
The following BLAST results are available for this feature:
BLAST of FC875581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
G3P_BUCAP1.244e-1644.12Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_ASHGO1.244e-1649.02Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P1_SHIFL1.244e-1644.12Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_ECOLI1.244e-1644.12Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL61.244e-1644.12Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO571.244e-1644.12Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_BACSU1.244e-1645.54Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_HAEIN2.123e-1643.14Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P_CLOAB2.123e-1646.00Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
E4PD_PROMH2.123e-1643.14D-erythrose-4-phosphate dehydrogenase OS=Proteus m... [more]

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Properties
Property NameValue
Genbank descriptionC31405E06EF CTVClemen1 Citrus clementina cDNA clone C31405E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875581 ID=FC875581; Name=FC875581; organism=Citrus clementina; type=EST; length=674bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTG
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