FC875581

Overview
NameFC875581
Unique NameFC875581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +KV INGFGRIGR   R    +K S ++++ +ND    +  +++LKYDS  G FK  +   D + I ++GK I+V S +DP +L W +L ID+VIE TG+F+
Sbjct:    3 IKVGINGFGRIGRVLFRL--AQKRSDIEIIAINDLLAPEYIAYMLKYDSTHGVFKKHITF-DKDNIIINGKNIRVTSIKDPEKLMWHDLSIDVVIESTGLFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.176e-16
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  372 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            KV INGFGRIGR   R  +  +   +D+V VND    V  A+++LKYDS  G F   V+  D  T+ V+GK IK  + RDP Q+PW+E G + V+E TGVF
Sbjct:    5 KVGINGFGRIGRIVFR--NAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRFNGTVEF-DGNTLIVNGKKIKFYAERDPAQIPWSETGAEYVVESTGVF 102          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR  LR  +  K+  ++VV VND     + A+++ KYDS  G FK  V+  D   I +DGK I+V   RDP  +PW + G D V+E TGVF
Sbjct:    3 IKVGINGFGRIGRIVLR--NALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVEAKDGGLI-IDGKHIQVFGERDPSNIPWGKAGADYVVESTGVF 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKD---SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD-PLQLPWAELGIDIVIEGTGVF 671
            ++V INGFGRIGRNF R    +++   + + VV +ND       ++LLK+DS+LG    DV + + +TI V  + IK ++ R+ P  LPW   G+D+V+E TG+F
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEHGIADVQVVAINDITDNSTLAYLLKFDSILGRLPHDVSLEEEDTIVVGSEKIKALAVREGPAALPWHAFGVDVVVESTGLF 107          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            + +AINGFGRIGR  LR    RK+  +DVV +ND    V  A+++ KYDS  G +K +V   D   + ++GK + V   +DP  LPW +LG+DI ++ TGVF
Sbjct:    2 VSIAINGFGRIGRLVLRIALERKN--IDVVAINDPFISVDYAAYMFKYDSTHGKYKGEVSH-DGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            + V INGFGRIGR  LR    RKD  + +V +ND     + AS++ KYDS  G +  +V   + E I +DGK I+V   RDP+ +PW + G+D VI+ TGVF
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKD--IQIVAINDPFIAPEYASYMFKYDSTHGRYSGEVSH-EGENIVIDGKKIRVYQERDPVNIPWGKDGVDYVIDSTGVF 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  381 INGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            INGFGRIGR   R    +K S +++V +ND    +  +++LKYDS  G F   V++ D   + V+GK I+V + RDP  L W E+G+D+V E TG+F+
Sbjct:    1 INGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVEVKDGHLV-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFL 95          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  360 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +A +KV INGFGRIGR   R  +  +   +++V VND     K A+++LKYDS  G F  ++K   N+ + ++GK +K  + RDP  +PW E G D V+E TGVF
Sbjct:    1 MAPIKVGINGFGRIGRIVFR--NAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIKQEGNDLV-INGKTVKFYTERDPAAIPWKETGADYVVESTGVF 102          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            ++VAINGFGRIGRN LR       + ++VV +ND G V+  +HLL++DS+ G F A V   D + I V    IKV + R+P +LPWA  G+D+ +E TG+F
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAINDLGQVETNAHLLRFDSVHGRFPAKVTSGD-DWIDVGRGPIKVTAIRNPAELPWA--GVDMAMECTGIF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            ++VAINGFGRIGR  LR     K   +DVV +ND     + A+++ KYDS  G +  +V   D + I +DGK IK    RDP  LPW +  IDIVIE TGVF
Sbjct:    2 VRVAINGFGRIGRIVLRI--AMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGEVTHDDKDLI-IDGKAIKCYQERDPADLPWGDNDIDIVIEATGVF 100          
The following BLAST results are available for this feature:
BLAST of FC875581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
G3P_BUCAI3.621e-1643.14Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_MONAN6.176e-1647.52Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_YARLI8.066e-1647.06Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_MYCLE8.066e-1640.95Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P1_KLUMA8.066e-1644.12Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_PICCI1.054e-1545.10Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_KLEPN1.054e-1542.86Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_COLGL1.054e-1542.86Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P2_RHOSH1.054e-1546.53Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P1_CANGA1.054e-1548.04Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405E06EF CTVClemen1 Citrus clementina cDNA clone C31405E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875581 ID=FC875581; Name=FC875581; organism=Citrus clementina; type=EST; length=674bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTG
back to top