FC875581

Overview
NameFC875581
Unique NameFC875581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  360 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +A  KV INGFGRIGR   R  +  +   +D+V VND     + A+++LKYDS  G FK D+K++ ++ + V+GK +K  + RDP  +PWAE     V+E TGVF
Sbjct:    1 MAPTKVGINGFGRIGRIVFR--NAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFKGDIKVL-SDGLEVNGKKVKFYTERDPANIPWAESEAYYVVESTGVF 102          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  H   D  +++V VND     + A+++LKYDS  G FK DV +  ++ + V GK ++  + RDP  +PW+E G D ++E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFRNAHEHSD--VEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGDVTVEGSDLV-VGGKKVRFYTERDPAAIPWSETGADYIVESTGVF 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +KV INGFGRIGR   R    R D  +++V +ND    +  ++ LKYDS  G F   V+++    + V+GK I+V S RDP  L W E+G+++V+E TG+F+
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPD--IEIVGINDLLDAEYMAYSLKYDSTHGRFDGTVEVIKGALV-VNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFL 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +K+ INGFGRIGR   R      KD  ++VV +ND       +++LKYDS+ G F  +V  VD  T+ V+GK I++ + +DP +L W E+G D+V+E TG+F+
Sbjct:    3 IKIGINGFGRIGRMVFRAAIANFKD--IEVVAINDLLEPDYLAYMLKYDSVHGRFDGEVS-VDGNTLVVNGKKIRLTAVKDPAELKWGEVGADVVVESTGIFL 102          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  +  + + +D+V VND     + A+++LKYDS  G FK D+K VD   ++V+GK I+    +DP  +PW+E G   V+E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIK-VDGNNLTVNGKTIRFHMEKDPANIPWSETGAYYVVESTGVF 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  +  +   +++V VND     K A+++LKYDS  G FK D++   +  ++V+ K I     RDP  +PW + G+D V+E TGVF
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFKGDIQHSSSNNLTVNNKTIHFYQERDPANIPWGKHGVDYVVESTGVF 102          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  372 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            KV INGFGRIGR  LR  +  +   ++VV +ND     + A ++ KYDS  G FK D+K VD + + +DGK IK    RDP  +PW + G + ++E TGVF
Sbjct:    4 KVGINGFGRIGRVVLR--NALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIK-VDGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVF 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +K+AINGFGRIGRN +R  +     + + +V +N+    +  +HLLKYD+  G F   VK+ + +TISV G  I +    +P +LPW  LG+D+V+E TGV+
Sbjct:    3 IKLAINGFGRIGRNIVRALYESGLSNEIKIVAINELADPEAIAHLLKYDTSHGRFFFPVKLGE-DTISVAGDAIALFCEPNPAELPWKTLGVDVVLECTGVY 103          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: E4PD_PHOLL (D-erythrose-4-phosphate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=epd PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KVAINGFGRIGR+ LR  +  GR+ + + V+ VN+    +  +HLLKYDS  G F  DV++ +N+ + V    I++    D   LPW ELGIDIV++ +G++
Sbjct:    3 IKVAINGFGRIGRSILRALYESGRR-AEIAVIAVNELADAEGIAHLLKYDSSHGRFAWDVRL-NNDVLQVGDDNIRLFHQSDISMLPWQELGIDIVLDCSGIY 103          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            ++V INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F+  V+ V    + V+GK I+V S RDP  L W E+ +D+V+E TG+F+
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRND--IEIVGINDLLDADYMAYMLKYDSTHGRFEGAVE-VQGGALVVNGKKIRVTSERDPANLKWNEINVDVVVESTGLFL 101          
The following BLAST results are available for this feature:
BLAST of FC875581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
G3P_SCLSC1.376e-1543.81Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_CRYPA1.376e-1544.12Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3PC_LEIME1.376e-1542.16Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RALSO1.797e-1542.72Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_COCHE1.797e-1545.10Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_PARBA2.347e-1542.16Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P1_TRIKO2.347e-1544.55Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
E4PD_PSEHT2.347e-1542.16D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
E4PD_PHOLL2.347e-1543.69D-erythrose-4-phosphate dehydrogenase OS=Photorhab... [more]
G3PC_TRYBB3.065e-1542.16Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC31405E06EF CTVClemen1 Citrus clementina cDNA clone C31405E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875581 ID=FC875581; Name=FC875581; organism=Citrus clementina; type=EST; length=674bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTG
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