FC875581

Overview
NameFC875581
Unique NameFC875581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: E4PD_YERPA (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=epd PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 42/103 (40.78%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGR+ LR  +  GR+ + + VV +N+    +  +HLLKYDS  G F  DV+  + +++ V   +I+++   +  QLPW+ELGID+V++ +GV+
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELASAEGMAHLLKYDSSHGRFAWDVR-QECDSLYVGDDIIRLIHQSEIEQLPWSELGIDVVLDCSGVY 103          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: E4PD_TOLAT (D-erythrose-4-phosphate dehydrogenase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=epd PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 42/103 (40.78%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGRN LR  +  GR+ + + VV +N+       +HLLKYDS  G F  DV+  + + + V    I+++  ++  QLPW +LG+DIV++ +GV+
Sbjct:    3 IRIAINGFGRIGRNVLRALYESGRR-AEIKVVAINEPADAAGMAHLLKYDSTHGRFDWDVR-QERDVLYVGDDAIRLLHQKEISQLPWGDLGVDIVLDCSGVY 103          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: E4PD_PSEA6 (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=epd PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 41/101 (40.59%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGV 668
            ++VAINGFGR+GRN LR  +   ++  + +V +N+    +  +HLLKYD+  G F+  V ++DN+ + V G  I ++   +   LPWA+L ID+V+E TGV
Sbjct:    2 IRVAINGFGRVGRNVLRALYETGQNKQIQIVAINELAEPEGVAHLLKYDTAHGRFRFPV-VLDNQQLVVAGDHITLLQQENIRDLPWAQLDIDVVLECTGV 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +K+AING+GRIGRN LR  +   +D  + +V +N+    +   HL ++D+  G F   V++  N  + V   LI + + RDP +LPW  LG+D+V++ TGVF
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINELAAPEAMVHLTRFDTSHGRFHHPVQLAGNSML-VGEDLISLFAERDPSRLPWRALGVDVVLDCTGVF 102          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR  L   +  +   L VV VND       A+++LKYDS  G FK D++ VD + + V+GK I+  S RDP  + W+E G + ++E TGVF
Sbjct:    3 IKVGINGFGRIGRILLS--NALEKPELSVVAVNDPFIEPTYAAYMLKYDSSHGLFKGDIE-VDGQNLVVNGKPIRFYSERDPANIKWSETGAEYIVESTGVF 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  360 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +A +KV INGFGRIGR   R  +  +   +++V VND     K A+++LKYDS  G F  ++    N+ + ++GK +K  + RDP  +PW E G D V+E TGVF
Sbjct:    1 MAPIKVGINGFGRIGRIVFR--NAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIAQDGNDLV-INGKKVKFYTERDPAVIPWKETGADYVVESTGVF 102          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN--ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +++AINGFGRIGR  LR    RKD  ++VV VND   + N  A++++KYDS  G +K  V   D++ I +DG  I     RDP  LPW  L ID+ ++ TGVF
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKD--IEVVAVNDPF-ISNDYAAYMVKYDSTHGRYKGTVSH-DDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG +
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFY 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_STAAU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus GN=gapA1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG +
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFY 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++VD     V+GK +K  S  D  +LPW +L ID+V+E TG +
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFY 100          
The following BLAST results are available for this feature:
BLAST of FC875581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
E4PD_YERPA6.829e-1540.78D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_TOLAT6.829e-1540.78D-erythrose-4-phosphate dehydrogenase OS=Tolumonas... [more]
E4PD_PSEA66.829e-1540.59D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
E4PD_AERHH6.829e-1539.22D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P_TRIAT8.918e-1545.10Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_COLLN1.165e-1441.90Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P1_YEAST1.165e-1445.63Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_STAAW1.165e-1445.54Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAU1.165e-1445.54Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAS1.165e-1445.54Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC31405E06EF CTVClemen1 Citrus clementina cDNA clone C31405E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875581 ID=FC875581; Name=FC875581; organism=Citrus clementina; type=EST; length=674bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTG
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