FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RICFE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia felis GN=sucC PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.270e-36
Identity = 90/234 (38.46%), Postives = 129/234 (55.13%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ  E++ KYG+    GL V   +++ +    +  + +  VVK+QI AGGRG         GGV +VK KEE + +A  M G  LVT QTGPQG+ V+++Y+     ++ E YF+I+ DR  +    I  ++GG  IE++AEK P  IVK  +D   G+ D     +   L  K        E VK +Y  F E+D   +EINPL   +   L+A DAK+ FDDN  F+
Sbjct:    1 MNIHEYQAKEILRKYGVPTSTGLVVTKTEKINETIDKL--NTEVYVVKAQIHAGGRGKA-------GGVKVVKSKEEAKKVAHDMFGINLVTHQTGPQGQKVNRLYIESGCDILKEYYFSIVFDRLASCITFIASTEGGVDIEEVAEKTPEKIVKFSVDPATGLQDFHMRGIAYELGFKDNQAKQMKEIVKSVYNAFVETDAAQIEINPLIVQTDGNLLALDAKITFDDNGLFK 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_OLICO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.270e-36
Identity = 90/237 (37.97%), Postives = 132/237 (55.70%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   ++ ++G++V KG+ +    + + A + +       VVKSQI AGGRG G FK   +G KGGV + K  +EV+    +MLG+ LVT QTGP GK V+++YL E   +  E Y + ++DR+T+    +  ++GG  IE +A   P  IV   +D   GI      KV   L  K      A + V +LY  F   D ++LEINPL  +   +L   DAK++FD NA +R
Sbjct:    1 MNIHEYQAKAVLREFGVSVSKGVPILKASDAEAAAKQL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVKQFVDQMLGKTLVTVQTGPAGKQVNRLYLEEGADIDKEFYLSALVDRETSRIAFVVSTEGGMDIEKVAHDTPEKIVTFSVDPATGIMPHHGRKVAQALKLKGDQAKQAEKLVNQLYTAFIAKDMSMLEINPLILSKQGELRCLDAKISFDSNAIYR 235          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CAMJD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.270e-36
Identity = 96/234 (41.03%), Postives = 128/234 (54.70%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   + A  GI   KG    SVDE     +++        VK+QI AGGRGLG       GGV I K  +EV+D A K+LG  LVT QTGP+GK+V K+Y+    ++V E Y AI+ +R      II  S+GG  IE +A++ P  I KV ID   G       +V   L     +    I  + KLYKL+ + D  +LEINPL +T+     A DAK +FDD+A +R
Sbjct:    1 MNIHEYQAKAIFADNGILTLKGKVAFSVDEAVSNAKEL--GGSVWAVKAQIHAGGRGLG-------GGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGANIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPGKIAKVGIDPQIGFKMFHGLEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSFDDSALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RICB8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia bellii (strain OSU 85-389) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.964e-36
Identity = 90/234 (38.46%), Postives = 127/234 (54.27%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ  E++ KYG+    G+ V   + +  A   +  + K  VVK+QI AGGRG         GGV +VK KEE + +A  M G  LVT QTGPQG+ V+++Y+     ++ E YF+++ DR  +    I  ++GG  IE++AEK P  I+K  +D   G+ +  A  +   L  K        E VK  YK F E+D   +EINPL       L+A DAK  FDDN  F+
Sbjct:    1 MNIHEYQAKEILRKYGVPTSTGVVVTKTESINAAIDKL--NTKVYVVKAQIHAGGRGKA-------GGVKVVKSKEEAKKVAHDMFGINLVTHQTGPQGQKVNRLYIESGCDILKEYYFSVVFDRSASCITFIASTEGGVDIEEVAEKTPEKIIKFSVDPATGLQNFHAQGIAYELGFKDHQVKQMKEIVKATYKAFIETDAAQIEINPLIVNKEGNLLALDAKFTFDDNGLFK 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SALRD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salinibacter ruber (strain DSM 13855) GN=sucC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.056e-36
Identity = 88/236 (37.29%), Postives = 132/236 (55.93%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + +HEYQ   L   YG++VP G+   +VD    A + +  ++     +VK+QI AGGRG G       GGV +    EEV + A  +LG  LVT QTGP+G+ V K+ + E + +  E Y  + LDR+T+   I+  ++GG  IE +AE+ P  I +V +D   G+      ++   +  +      A+  ++ LY+ F E+DCTL EINPL +T G  + A DAK+N DDNA FR
Sbjct:    1 MKLHEYQAKGLFRDYGVSVPDGIVAETVDAAVDAARRLEEENDATLFIVKAQIHAGGRGKG-------GGVKLAHSVEEVREHADNILGMDLVTHQTGPEGQTVRKILVTEGVDIDQEYYLGVTLDRETSMNAIMVSTEGGVDIETVAEESPEKIQRVWVDPSIGLRPFQTRQLAFAMGLEGDAFKQAVASIQGLYEAFEENDCTLAEINPLVQTPGGDIEAVDAKVNLDDNALFR 229          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CAMJ8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=sucC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.056e-36
Identity = 95/234 (40.60%), Postives = 127/234 (54.27%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   + A  GI   KG    SVDE     +++        VK+QI AGGRGLG       GGV I K  +EV+D A K+LG  L T QTGP+GK+V K+Y+    ++V E Y AI+ +R      II  S+GG  IE +A++ P  I KV ID   G       +V   L     +    I  + KLYKL+ + D  +LEINPL +T+     A DAK +FDD+A +R
Sbjct:    1 MNIHEYQAKAIFADNGIPTLKGKVAFSVDEAVSNAKEL--GGSVWAVKAQIHAGGRGLG-------GGVKIAKNLDEVKDYASKILGMNLATHQTGPEGKLVQKLYIESGANIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHGLEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSFDDSALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CAMJR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter jejuni (strain RM1221) GN=sucC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.604e-36
Identity = 95/234 (40.60%), Postives = 127/234 (54.27%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   +    GI   KG    SVDE     +++        VK+QI AGGRGLG       GGV I K  +EV+D A K+LG  LVT QTGP+GK+V K+Y+    ++V E Y AI+ +R      II  S+GG  IE +A++ P  I KV ID   G       +V   L     +    I  + KLYKL+ + D  +LEINPL +T+     A DAK +FDD+A +R
Sbjct:    1 MNIHEYQAKAIFVDNGIPTLKGKVAFSVDEAVANAKEL--GGSVWAVKAQIHAGGRGLG-------GGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGANIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHGLEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSFDDSALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CAMJJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sucC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.604e-36
Identity = 95/234 (40.60%), Postives = 127/234 (54.27%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   + A   I   KG    SVDE     +++        VK+QI AGGRGLG       GGV I K  +EV+D A K+LG  LVT QTGP+GK+V K+Y+    ++V E Y AI+ +R      II  S+GG  IE +A++ P  I KV ID   G       +V   L     +    I  + KLYKL+ + D  +LEINPL +T+     A DAK +FDD+A +R
Sbjct:    1 MNIHEYQAKAIFADNSIPTLKGKVAFSVDEAVANAKEL--GGSVWAVKAQIHAGGRGLG-------GGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGANIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHGLEVAKVLGLDKDESKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSFDDSALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CAMJE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter jejuni GN=sucC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.604e-36
Identity = 95/234 (40.60%), Postives = 127/234 (54.27%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   +    GI   KG    SVDE     +++        VK+QI AGGRGLG       GGV I K  +EV+D A K+LG  LVT QTGP+GK+V K+Y+    ++V E Y AI+ +R      II  S+GG  IE +A++ P  I KV ID   G       +V   L     +    I  + KLYKL+ + D  +LEINPL +T+     A DAK +FDD+A +R
Sbjct:    1 MNIHEYQAKAIFVDNGIPTLKGKVAFSVDEAVANAKEL--GGSVWAVKAQIHAGGRGLG-------GGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGANIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHGLEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSFDDSALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BREBN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=sucC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.604e-36
Identity = 84/234 (35.90%), Postives = 133/234 (56.84%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQG E++ +YG+ VP+G    +V+E  +A +++       VVK+QI AGGRG         GGV + K  +EV   A ++LG++LVT QTGP+GK V ++ + +   +  E Y  +++DR T   +++   +GG  IE++A   P  I K  +D   G+    A ++   +       N A + +  LY+ F + D ++ EINPL  T   +++A DAKLNFD NA +R
Sbjct:    1 MNIHEYQGKEILKQYGVKVPEGRVAFTVEEAVEAAKELGTQVN--VVKAQIHAGGRGKA-------GGVKVAKNLDEVRTYASEILGKVLVTHQTGPEGKEVKRLLIEQGCDIKKEYYVGVVVDRATGSVVMMASEEGGMDIEEVAANNPEKIFKEVVDPVTGLNGFQARRLAYAINIPKELINKAAKFMMSLYQAFVDKDASIAEINPLVVTGDGEVMALDAKLNFDSNALYR 225          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RICFE2.270e-3638.46Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_OLICO2.270e-3637.97Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAMJD2.270e-3641.03Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICB82.964e-3638.46Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SALRD5.056e-3637.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAMJ85.056e-3640.60Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAMJR6.604e-3640.60Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAMJJ6.604e-3640.60Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAMJE6.604e-3640.60Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BREBN6.604e-3635.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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