FC875593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain TIE-1) GN=sucC PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 8.625e-36 Identity = 92/237 (38.82%), Postives = 128/237 (54.01%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ ++ ++G+ V G + E + A + + VVKSQI AGGRG G FK +G KGGV + K +EV++ A +MLG LVT QTG GK V+++Y+ E + E Y ++++DR T+ + ++GG SIED+A + P IV +D GI V L K A V KLY F D +LEINPL T L DAK++FD NA +R Sbjct: 1 MNIHEYQAKAVLREFGVPVGHGFPIFKASEAEAAAKQL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVKEFAKQMLGATLVTVQTGADGKQVNRLYIEEGSDIDKEFYLSLLVDRATSRISFVVSTEGGMSIEDVAHETPEKIVSFTVDPATGIMGHHGRTVAKALNLKGEQAKQAEAMVAKLYTAFVAKDMDMLEINPLVLTKQGDLKCLDAKISFDGNALYR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris GN=sucC PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 8.625e-36 Identity = 92/237 (38.82%), Postives = 128/237 (54.01%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ ++ ++G+ V G + E + A + + VVKSQI AGGRG G FK +G KGGV + K +EV++ A +MLG LVT QTG GK V+++Y+ E + E Y ++++DR T+ + ++GG SIED+A + P IV +D GI V L K A V KLY F D +LEINPL T L DAK++FD NA +R Sbjct: 1 MNIHEYQAKAVLREFGVPVGHGFPIFKASEAEAAAKQL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVKEFAKQMLGATLVTVQTGADGKQVNRLYIEEGSDIDKEFYLSLLVDRATSRISFVVSTEGGMSIEDVAHETPEKIVSFTVDPATGIMGHHGRTVAKALNLKGEQAKQAEAMVAKLYTAFVAKDMDMLEINPLVLTKQGDLKCLDAKISFDGNALYR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=sucC PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35 Identity = 93/237 (39.24%), Postives = 128/237 (54.01%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ ++ ++G+ V G + E + A + + VVKSQI AGGRG G FK +G KGGV + K +EV+D A +ML LVT QTGP GK V+++Y+ E + E Y ++++DR T+ + ++GG SIED+A P IV +D GI V + L K A V KLY F D +LEINPL T L DAK++FD NA +R Sbjct: 1 MNIHEYQAKAVLREFGVPVSHGYPIFKASEAEAAAKQL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVKDYAQQMLHATLVTVQTGPAGKQVNRLYVEEGSEIDKEFYLSLLVDRATSRISFVVSTEGGMSIEDVAHDTPEKIVSFTVDPATGIMAHHGRAVANTLGLKGEQAKQAESLVTKLYTAFLAKDMEMLEINPLVLTKQGDLKCLDAKMSFDGNALYR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FLAJ1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=sucC PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35 Identity = 90/247 (36.44%), Postives = 144/247 (58.30%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGL----AVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-----SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739 +NIHEYQG E++A YG+ V +G+ AV +V K+ T + V+K+QI AGGRG G GGV + K ++VE+LA +++G L+T QT P+GK V+KV + E + S +E Y +++L+R T +I+ ++GG IE++AE P++I ID G+ A ++ L + ++ + LY + SD ++ EINP+ +TS +++A DAK+N DDNA +RQ +Y Sbjct: 1 MNIHEYQGKEILASYGVRVQRGIVANNAVEAVAAAKQLTAETGTGWH--VIKAQIHAGGRGKG-------GGVKLAKNLQQVEELAEQIIGMQLITPQTPPEGKKVNKVLVAEDVYYPGESETSEFYVSVLLNRGTGRNMIMYSTEGGMDIEEVAEHTPHLIFTEEIDPTVGLQGFQARRIAFNLGLSGNAFKEMVKFIDALYNAYIGSDASMFEINPVLKTSDNKILAVDAKVNIDDNALYRQPKY 238
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CAMFF (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=sucC PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.471e-35 Identity = 92/240 (38.33%), Postives = 141/240 (58.75%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIE---QVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736 +NIHE+Q EL+ +GINV G+ V SVD+ A + + VK+QI AGGRGLG GGV I K +EV++ A K+LG LVTKQTGP+GK+V K+Y+ + ++ E Y ++ DR +I + GG +IE++ + I+ + ID G+ D + + D L D++ +++ + KLY+L+ ++D L+EINPL T L+ DAK+ FDD+A FRQ++ Sbjct: 1 MNIHEFQAKELLRDFGINVADGIMVVSVDDALNAAKKL--GGSVWAVKAQIHAGGRGLG-------GGVKIAKSLDEVKEYASKILGMTLVTKQTGPEGKLVKKLYIEKGTNIDKEYYLSLTFDRINECIAVIASADGGMNIEEVDH---DKIITIRIDPQIGLRDFHSLAIADFLN---LDKDLSVKLHVLLSKLYRLYWQTDSNLVEINPLVLTKENDLIPLDAKMGFDDSALFRQEK 225
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ANAPZ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Anaplasma phagocytophilum (strain HZ) GN=sucC PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.471e-35 Identity = 91/235 (38.72%), Postives = 129/235 (54.89%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730 +N+HE+Q +++ + + VPKG+ V SV+EV A + + VK+QI AGGRG GGV I K +EEV DL MLG +LVT QT G+ V VYL E +S+ E Y ++DRK +I S+GG IE++A P M+V V +D G D K+ GL K +K+ + E+D + +EINPL ET+ + +A DAK+ FDDN FR+ Sbjct: 1 MNVHEFQAKGILSGFDVRVPKGVVVRSVEEVDSALGSLAAGI--VAVKAQIHAGGRGKA-------GGVKIGKAREEVADLVKSMLGSVLVTHQTSAAGQKVHAVYLEEGVSIKKEYYLGAVVDRKAGMVSVIFSSEGGMDIEEVAHSRPEMVVVVNVDPVYGFLDFHGRKLCYGLGLKKEQVVQITAMARKVCRALMETDASQVEINPLVETTCGEFIALDAKMTFDDNGLFRR 226
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ZYMMO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Zymomonas mobilis GN=sucC PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.921e-35 Identity = 91/236 (38.56%), Postives = 130/236 (55.08%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLK--GGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NI+EYQ L+ + G++V G A+V+E KA + + V+KSQILAGGRG G F+ K GGV +V V+ A MLG+ LVT QT QG V K+ + E +S+ E Y ++++DR+T + +GG IE +A++ P I ++ ID G + L I+ LYK F SD +LLEINPL ET+ +L+ DAK++FDDNA FR Sbjct: 1 MNIYEYQAMALLNERGVSVVPGYMAANVEEAVKAAEQL--SSPPYVIKSQILAGGRGKGYFRESPKEGGGVRLVSDIAAVKKQAESMLGRHLVTAQTDDQGIPVEKLLITEAVSIAREFYLSLLVDRQTGRVTFVASPEGGMDIETVAKEKPEAIHRIAIDPATGFQPHHGRMIGFALGLSGDVFKQGIKLAASLYKAFTTSDMSLLEINPLVETNDGKLLPVDAKISFDDNALFR 234
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=sucC PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35 Identity = 89/237 (37.55%), Postives = 130/237 (54.85%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ ++ +G+++ KG+A+ + + A + + VVKSQI AGGRG G FK +G KGGV + K EEV+ A +MLG LVT QTGP GK V+++Y+ + + E Y ++++DR T+ + ++GG +IED+A P I+ +D GI V L A V +LY F D +LEINPL T +L DAK++FD NA +R Sbjct: 1 MNIHEYQAKAVLQPFGVSLSKGVAILKATDAEAAAKQL--GGPIWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIEEVKQYAAEMLGATLVTIQTGPAGKQVNRLYIEDGSDIEKEFYLSLLVDRVTSRISFVVSTEGGMNIEDVAHDTPEKIISFSVDPATGIMGHHGRTVAKALGLTGDLAKQAERLVAQLYAAFISKDMEMLEINPLVVTKQGELKCLDAKMSFDGNALYR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHILW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=sucC PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35 Identity = 95/237 (40.08%), Postives = 125/237 (52.74%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ L+ YG V +G+A+ V+E A + + VVKSQI AGGRG G FK KGGV + K EEV A +MLG LVT QTG GK V+++Y+ + + E+Y +I++DR + ++GG IE +A P I + ID G+T D A + L A DA LYK F E D LLE+NPL L DAK++FD NA FR Sbjct: 1 MNIHEYQAKALLKGYGAPVAEGVAILKVEEAAAAAKSL--PGPLYVVKSQIHAGGRGKGKFKELSPEAKGGVRLAKSIEEVVAHAKEMLGNTLVTAQTGDAGKQVNRLYIEDGADIARELYCSILVDRSVGRVAFVVSTEGGMDIEAVAHDTPEKIQTIAIDPEAGVTAADVAAISKALQLDGAAAEDAKSLFPALYKAFNEKDMALLEVNPLIVMKDGHLRVLDAKMSFDGNALFR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_JANSC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Jannaschia sp. (strain CCS1) GN=sucC PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35 Identity = 89/237 (37.55%), Postives = 131/237 (55.27%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ L+A+YG V G V ++ K A ++ D VVK+QI AGGRG G FK +G GGV + K +E D A KMLG+ LVT QTGP GK V+++Y+ + + EMY A+++DR+++ + ++GG IE++A P I+ +D G +V L + ++ + +L+ F E D +LEINPL T L DAK++FD NA +R Sbjct: 1 MNIHEYQAKALLAQYGAPVSDGRVVTKAEDAKTAAGEM--DGPLWVVKAQIHAGGRGKGKFKEADAGEAGGVRLAKSAQEAADEAKKMLGRTLVTHQTGPVGKQVNRIYIEDGSGIETEMYLALLVDRQSSRISFVCSTEGGMDIEEVAASTPEKILSFSVDPATGYQPYHGRRVAFSLGLEGQQVKQCVKLMGQLFTAFQEKDMEMLEINPLIVTDEGNLKVLDAKVSFDGNAVYR 235 The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bpback to top |