FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHIL3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=sucC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.536e-35
Identity = 93/237 (39.24%), Postives = 126/237 (53.16%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   L+  YG  V +G+A+  V+E + A + +       VVKSQI AGGRG G FK      KGGV + K  +EV   A +MLG  LVT QTG  GK V+++Y+ +   +  E+Y ++++DR       +  ++GG  IE +A   P  I  + ID   G+T  D A +      + A   DA      LYK F E D  LLEINPL       L   DAK++FD NA FR
Sbjct:    1 MNIHEYQAKALLKGYGAPVAEGVAILKVEEAEAAAKSL--PGPLYVVKSQIHAGGRGKGKFKELSPEAKGGVRLAKSIDEVVAHAKEMLGNTLVTAQTGEAGKQVNRLYIEDGADIARELYCSLLVDRSVGRVAFVVSTEGGMDIEAVAHDTPEKIQTIAIDPEAGVTAADVAAISKAFELEGAAAEDAKTLFPMLYKAFGEKDMALLEINPLIVMKDGHLRVLDAKMSFDGNALFR 235          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_LEPIN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira interrogans GN=sucC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.536e-35
Identity = 85/236 (36.02%), Postives = 130/236 (55.08%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDH--KELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + IHEYQ  E++ ++  NVP G+ +   +   KA  +V        +VVK+QI AGGRG G       GGV + K KE+      K+LG  L+T QTGP+GK V KVYL + + +  E Y +I+LDR     II+  ++GG  IE++AE +P  I+K+ ID   G+    A ++   L             +  +Y+ + + D +LLEINPL  T   +++A D K++ D+NA +R
Sbjct:    1 MKIHEYQAKEILRRHKANVPFGVVIDKKENASKAHDEVTSKTGGSVVVVKAQIHAGGRGKG-------GGVKVTKTKEDAIAAVDKILGMQLITPQTGPEGKKVLKVYLEQGIDIAKEYYLSILLDRSIRKTIIMASTEGGMEIEEVAETHPEKILKIAIDPGIGLQVNQARQLAFELGLPAESHKSFQSLLAAIYEAYIKEDASLLEINPLILTKQNEIIAGDCKIDLDENALYR 229          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_LEPIC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=sucC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.536e-35
Identity = 85/236 (36.02%), Postives = 130/236 (55.08%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDH--KELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + IHEYQ  E++ ++  NVP G+ +   +   KA  +V        +VVK+QI AGGRG G       GGV + K KE+      K+LG  L+T QTGP+GK V KVYL + + +  E Y +I+LDR     II+  ++GG  IE++AE +P  I+K+ ID   G+    A ++   L             +  +Y+ + + D +LLEINPL  T   +++A D K++ D+NA +R
Sbjct:    1 MKIHEYQAKEILRRHKANVPFGVVIDKKENASKAHDEVTSKTGGSVVVVKAQIHAGGRGKG-------GGVKVTKTKEDAIAAVDKILGMQLITPQTGPEGKKVLKVYLEQGIDIAKEYYLSILLDRSIRKTIIMASTEGGMEIEEVAETHPEKILKIAIDPGIGLQVNQARQLAFELGLPAESHKSFQSLLAAIYEAYIKEDASLLEINPLILTKQNEIIAGDCKIDLDENALYR 229          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOP2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain HaA2) GN=sucC PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.245e-34
Identity = 91/237 (38.40%), Postives = 126/237 (53.16%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   ++ ++G+ V  G  +    E + A   +       VVKSQI AGGRG G FK   +G KGGV + K  +EV+  A +ML   LVT QTGP GK V+++Y+ E   +  E Y ++++DR T+    +  ++GG SIED+A   P  IV   +D   GI       V + L  K      A   V KLY  F   D  +LEINPL  T    L   DAK++FD N+ +R
Sbjct:    1 MNIHEYQAKAVLREFGVPVSHGYPIFKASEAEAAATKL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSVDEVKTYAEQMLHATLVTVQTGPAGKQVNRLYIEEGSEIDKEFYLSLLVDRATSRISFVVSTEGGMSIEDVAHDTPEKIVSFTVDPATGIMSHHGRAVANALGLKGDQAKQAESLVTKLYTAFLAKDMEMLEINPLVLTKQGDLKCLDAKMSFDGNSLYR 235          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SOLUE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Solibacter usitatus (strain Ellin6076) GN=sucC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.627e-34
Identity = 87/236 (36.86%), Postives = 133/236 (56.36%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            + IHEYQ   ++A+Y + VP+G    +  + + A + +      +VVK+QI AGGRG G       GGV + K   E  +LA K+LG  LVT QTGP+G++V ++ + E L +  E+Y  I+LDR    P+ +  S GG  IE++A K P +I+K  ++ + G++   A K+  G+    A  N A   +  L K +   D +L EINP   T+  ++ A DAK+ FDDNA +R K
Sbjct:    1 MKIHEYQAKAILAQYKVPVPRGHVAYTEADAETAAKTL---GGSVVVKAQIHAGGRGKG-------GGVKVAKDAAEALELAKKILGMTLVTHQTGPEGRLVQRLLIEETLPIERELYLGIVLDRVQGKPVFMASSAGGMDIEEVAAKTPELILKETLE-YPGLSPYQARKLAFGIGIPAASVNAAAAAMTALSKAYWAMDASLAEINPFILTTDGKVYALDAKITFDDNALYRHK 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_AGRT5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=sucC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.627e-34
Identity = 91/239 (38.08%), Postives = 126/239 (52.72%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +NIHEYQ   L+  YG  V +G+A+  V+E + A + +       VVKSQI AGGRG G FK      KGGV + K  EEV   +  MLG  LVT QTG  GK V+++Y+ +   +  E+Y ++++DR       +  ++GG  IE +A   P  I  + I+   G++D D A +   L        DA      LYK F E D  LLE+NPL       L   DAK++FD NA FR +
Sbjct:    1 MNIHEYQAKALLKGYGAPVAEGVAILKVEEAEAAAKQL--PGPLYVVKSQIHAGGRGKGKFKELGPDAKGGVRLAKSIEEVVSHSRDMLGNTLVTAQTGDAGKQVNRLYIEDGADIARELYCSLLVDRSVGQVAFVVSTEGGMDIEAVAHDTPEKIHTIAINPEKGVSDADVAAISKALELDGVAAEDAKALFPILYKAFNEKDMALLEVNPLIVMENGHLRVLDAKMSFDGNALFRHE 237          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_METFK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=sucC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.124e-34
Identity = 87/237 (36.71%), Postives = 136/237 (57.38%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK-LYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N+HEYQ   L+ +YG+NVP+     +     +A + +  D    VVK+Q+ AGGRG         GGV +V+  +EV+D+A  +LG+ LVT Q  P G+ V KV +   L +  E+Y ++++DR     +++  + GG  IE++A+  P  I++   D  NG+ D  A  +   L   V D+  A  ++ K LY+LF E+D  LLEINPL  T+   LVA D K++ DDNA +R++
Sbjct:    1 MNLHEYQAKALLQRYGVNVPRSQVAETAQAAVEAARALEGD--AWVVKAQVHAGGRGKA-------GGVKLVRTLDEVQDIAVSLLGKRLVTYQNAPDGQPVEKVLVEATLPIARELYVSMLVDRSLERVVLVASAAGGMEIEEIAKDSPEKILQEVCDPLNGLVDYQARNIAFALG-LVGDQVAAFTRLAKGLYRLFKENDLALLEINPLIVTAEGALVALDCKMSVDDNALYRRR 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: MTKA_METEA (Malate--CoA ligase subunit beta OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkA PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.124e-34
Identity = 84/236 (35.59%), Postives = 131/236 (55.51%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +++HEYQ  EL+A +G+ VPKG    S D+   A  ++        VK+QI AG RG         GG+ + +   EV D A  +LG+ LVT QTGP+GK V +VY+        E+Y   +LDRK     +I   +GG  IE++A K P  +++V ++   G+    A ++   L   +   + A++ +   Y+ F + D T+LEINPL  T   +++A DAK++FDDNA FR++
Sbjct:    1 MDVHEYQAKELLASFGVAVPKGAVAFSPDQAVYAATELGGSF--WAVKAQIHAGARGKA-------GGIKLCRTYNEVRDAARDLLGKRLVTLQTGPEGKPVQRVYVETADPFERELYLGYVLDRKAERVRVIASQRGGMDIEEIAAKEPEALIQVVVEPAVGLQQFQAREIAFQLGLNIKQVSAAVKTIMNAYRAFRDCDGTMLEINPLVVTKDDRVLALDAKMSFDDNALFRRR 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_WOLSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Wolinella succinogenes GN=sucC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.775e-34
Identity = 87/234 (37.18%), Postives = 128/234 (54.70%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   L+A+YG+ +P+G    +  E     Q +    +   +K+QI AGGRG         GGV + K  EE  ++A  MLG  L+T QT  +GK V KVY+ E L +  E Y  I+LDR    P+I+   +GG  IE++A+  PN I+KV +D   G       K+   L          ++    L++L+ + D  ++EINPL  TS K+ VA DAK++FD+NA +R
Sbjct:    1 MNIHEYQAKALLAQYGVGIPRGGVAETPAEATVIAQRL--GGEIWAIKAQIHAGGRGKA-------GGVKLAKTPEEAGEIAKAMLGSRLITHQTSLEGKEVHKVYVEEGLGIEREYYLGIVLDRSLEMPVIMASRQGGVDIEEVAKNSPNEIIKVAVDPMIGFRPFHGRKLAFALGLAKEQVGLFVDFCTSLFRLYVQKDAEIVEINPLVFTSCKRFVALDAKISFDNNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PELPD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelobacter propionicus (strain DSM 2379) GN=sucC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.775e-34
Identity = 82/238 (34.45%), Postives = 135/238 (56.72%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739
            + IHEYQ  +++A +GI +P+G    +  +V++A +++       V+K+Q+ AGGRG G       GG+ + +   +  ++A ++LG  LVT QTGP+G  V ++ + E + +  E+Y +I LDR+++   +I  ++GG  IE++A   P+ I  + ID F G+    A +   GL        + +E +  LY+   E DC+L+EINPL  T+   LVA D K+ FDDNA  R   Y
Sbjct:    1 MKIHEYQAKDILAGFGIAIPRGRVAMNASQVERAAREL---GGHCVIKAQVYAGGRGKG-------GGIRVAQDPGQAGEIAKELLGTKLVTPQTGPEGLEVRRLLVEEVVDIERELYLSITLDRESSRYCLIASAEGGMDIEEIARTAPDRIRILTIDPFIGLRSYQARRTALGLGLVGPLCEECVELILNLYRCLLERDCSLVEINPLVVTNAGWLVAMDTKMTFDDNALQRHCEY 228          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RHIL39.536e-3539.24Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEPIN9.536e-3536.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEPIC9.536e-3536.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOP21.245e-3438.40Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SOLUE1.627e-3436.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AGRT51.627e-3438.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_METFK2.124e-3436.71Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
MTKA_METEA2.124e-3435.59Malate--CoA ligase subunit beta OS=Methylobacteriu... [more]
SUCC_WOLSU2.775e-3437.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PELPD2.775e-3434.45Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
back to top