FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ORITI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Orientia tsutsugamushi (strain Ikeda) GN=sucC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.624e-34
Identity = 85/237 (35.86%), Postives = 135/237 (56.96%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +NIHEYQ  E+++KY + +  G+A+   +++  A   +  D    V+K+QI AGGR +G       GG+ I   K E ++LA  M G  LVT QTGP+G+ V ++Y+     +  E+Y   ++DR       +  S+GG +IE++A   P+ I+KV I++  GI    + K++   GL   +A +   I  +  +Y +   +D T +EINPL  T   +L+A DAK+NFDD+A FRQ
Sbjct:    1 MNIHEYQAKEILSKYNVPIQPGIAILKYEDIDYAIDSLATD--TFVIKAQIHAGGRKIG-------GGIKISNDKNEAKNLAKNMWGMNLVTPQTGPKGQKVQRIYIESAAKIKLELYLGAVIDRSNHCITFMASSEGGINIEEVAHTNPDKIIKVKINILTGIQPFHSRKIIFQLGLTGDLAKQMAKI--MSAVYSMLINTDATQVEINPLIITLDDKLIALDAKINFDDSALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BRASB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=sucC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.624e-34
Identity = 88/237 (37.13%), Postives = 129/237 (54.43%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   L+ ++G+ + KG+ V   ++   A + +       VVKSQI AGGRG G FK   +G KGGV + K  +EV   A +MLG  LVT QTGP GK V+++Y+ +   +  E Y ++++DR+T+    +  ++GG +IED+A   P  I+   +D   G+       V   L         A +   +LY  F   D  +LEINPL  T   QL   DAK++FD NA F+
Sbjct:    1 MNIHEYQAKALLHEFGVPISKGVPVLRPEDSDAAAKAL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVNAFAKQMLGATLVTVQTGPDGKQVNRLYIEDGSDIDKEFYLSLLVDRETSKVAFVVSTEGGVNIEDVAHSTPEKIITFSVDPATGVMPHHGRAVAKALKLSGDLAKQAEKLTIQLYTAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALFK 235          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RICAH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia akari (strain Hartford) GN=sucC PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.733e-34
Identity = 87/234 (37.18%), Postives = 126/234 (53.85%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ  E++ KYG+    GL V   +++ +    +  + +  VVK+QI AGGRG         GGV +VK KEE + +A  M G  LVT QT PQG+ V+ +Y+     ++ E YF+I+ DR  +    I  ++GG  IE++A K P  I+K  +D   G+ D     +   L  K        E VK +Y  F E+D   +EINPL   +   L+A DAK+ FDDN  F+
Sbjct:    1 MNIHEYQAKEILRKYGVPTSTGLVVTKTEKINETIDKL--NTEVYVVKAQIHAGGRGKA-------GGVKVVKSKEEAKKVAHDMFGINLVTHQTEPQGQKVNCLYIESGCDILKEYYFSIVFDRSASCITFIASTEGGVDIEEVAAKTPAKIIKFSVDPATGLQDFHMRGIAYELGFKDNQAKQMKEIVKSVYNAFVETDAAQIEINPLIVQTDGNLLALDAKITFDDNGLFK 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_LARHH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Laribacter hongkongensis (strain HLHK9) GN=sucC PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.733e-34
Identity = 87/235 (37.02%), Postives = 129/235 (54.89%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  EL+AKYG+ V +G+  ++ DE   A   +    K  VVK+Q+ AGGRG         GGV +VK +EE  D+A  ++G+ LVT QT   G+ V+ V +CE +  V  E+Y   ++DR T     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  K    N+ ++ +   Y+ F E+D  L EINPLA  +   L   DAK+  D NA +R
Sbjct:    1 MNLHEYQAKELLAKYGLPVQQGILASNADEAAAAFDQL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSREEAADVAATLIGKNLVTYQTDANGQPVNSVLVCEDMYPVERELYLGAVVDRSTRRVTFMASTEGGVEIEEVAHNTPEKILKVTVDPLVGLLPFQAREVAFALGLKDKQVNEFVKLMTGAYRAFVENDFALFEINPLAVRANGALACVDAKVGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ORITB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Orientia tsutsugamushi (strain Boryong) GN=sucC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-34
Identity = 85/237 (35.86%), Postives = 134/237 (56.54%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +NIHEYQ  E+++KY + +  G+A+   +++  A   +  D    V+K+QI AGGR +G       GG+ I   K E ++LA  M G  LVT QTGP+G+ V ++Y+     +  E+Y   ++DR       +  S GG +IE++A   P+ I+KV I++  GI    + K++   GL   +A +   I  +  +Y +   +D T +EINPL  T   +L+A DAK+NFDD+A FRQ
Sbjct:    1 MNIHEYQAKEILSKYNVPIQPGIAILKYEDIDYAIDSLATD--TFVIKAQIHAGGRKIG-------GGIKISNDKNEAKNLAKNMWGMNLVTPQTGPKGQKVQRIYIESAAKIKLELYLGAVIDRSNHCITFMASSAGGINIEEVAHTNPDKIIKVKINILTGIQPFHSRKIIFQLGLTGDLAKQMAKI--MSAVYSMLINTDATQVEINPLIITLDDKLIALDAKINFDDSALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_EHRRG (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ehrlichia ruminantium (strain Gardel) GN=sucC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.073e-34
Identity = 89/239 (37.24%), Postives = 127/239 (53.14%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +NIHEYQ  +++ ++GI+VP+G+ V S++EV  A   +  + K +VVK+QI AGGRG         GGV + +  +E +     MLG  LVT QT   G+ V KVYL E   +  E Y + +++RK     II  ++GG  IE++A   P  +V   ID   G        +       V          KK+YK   E+D + +EINPL ETS    +A DAK+NFDDNA +R    L
Sbjct:    1 MNIHEYQAKQILKRFGISVPEGVIVHSLNEVNDAINKI--NSKVIVVKAQIHAGGRGKA-------GGVIVSRTLDEAKTAIKNMLGSTLVTHQTSKDGQKVRKVYLEEGCDIKKEYYISAIVNRKHGQISIIFSTEGGVDIEEVAANSPEKVVTCNIDPIFGFQGFHGRNLCFDSNLSVDQTRKITSIAKKIYKTMLETDASQIEINPLIETSSGDFIALDAKMNFDDNAIYRHPEIL 230          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FLAPJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=sucC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 82/245 (33.47%), Postives = 139/245 (56.73%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-----SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739
            +NIHEYQG E++A YG+ + +G+   +  E   A + +  +      VVK+Q+ AGGRG G       GGV + K  ++VE+++ +++G  L+T QT  +GK V KV + E +     S  +E Y +++L+R T   +I+  ++GG  IE++A   P++I    ID   G+    A ++   L        + ++ +  LY  +  SD ++ EINP+ +TS  +++A DAK+N DDNA +RQ +Y
Sbjct:    1 MNIHEYQGKEILASYGVRIQRGIVANNPVEAVAAAKQLTTETGTSWYVVKAQVHAGGRGKG-------GGVKLAKNLQQVEEISEQIIGMQLITPQTSAEGKKVHKVLIAEDVYYPGESETSEFYISVLLNRSTGRNMIVYSTEGGMDIEEVAAHTPHLIHNEEIDPSVGLQAFQARRIAFNLGLSGNAFKEMVKFIDSLYNAYIGSDASMFEINPVLKTSDDKIMAVDAKVNIDDNALYRQPKY 238          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_EHRRW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ehrlichia ruminantium (strain Welgevonden) GN=sucC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.349e-33
Identity = 88/239 (36.82%), Postives = 127/239 (53.14%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +NIHEYQ  +++ ++GI+VP+G+ V S++EV  A   +  + K +VVK+QI AGGRG         GGV + +  +E +     MLG  LVT QT   G+ V KVYL E   +  E Y + +++RK     II  ++GG  IE++A   P  +V   ID   G        +       V          +K+YK   E+D + +EINPL ETS    +A DAK+NFDDNA +R    L
Sbjct:    1 MNIHEYQAKQILKRFGISVPEGVIVHSLNEVNDAINKI--NSKVIVVKAQIHAGGRGKA-------GGVIVSRTLDEAKTAIKNMLGSTLVTHQTSKDGQKVRKVYLEEGCDIKKEYYISAIVNRKHGQISIIFSTEGGVDIEEVAANSPEKVVTCNIDPIFGFQGFHGRNLCFDSNLSVDQTRKITSIAEKIYKTMLETDASQIEINPLIETSSGDFIALDAKMNFDDNAIYRHPEIL 230          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOBA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopirellula baltica GN=sucC PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.006e-33
Identity = 88/237 (37.13%), Postives = 128/237 (54.01%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTF--KSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            + IHEYQG +L    G+ V  G  V + DE   A   +    K  VVK+QI AGGRG G        KG V +   EE +  A  +LG+ LVT QTGP+G+ VSKV++     +  E+Y  I++DR  + P+++  ++GG  IE +AE+ P +I K   D   G+      K+   L  + A    A + +  + + F + DC + EINPL  T   ++VA DAK+ FD+NA FR K
Sbjct:    1 MKIHEYQGKQLFRTAGVPVLDGHMVTTPDEAAAAYDKL--GGKIAVVKAQIHAGGRGKGNVIDNPDQKGVVLVKSAEEAKAAAEGLLGKKLVTIQTGPEGQTVSKVFVEAGCDIARELYLGIVVDRAGSKPVLMVSTEGGVEIETVAEETPELIFKEHFDPAVGLDGFQVRKLCKKLGIEGAAAKSAYKFMTAMCRFFVDFDCEMAEINPLVITGDGEMVALDAKIIFDENAMFRHK 235          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HYDS0 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=sucC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.006e-33
Identity = 94/240 (39.17%), Postives = 136/240 (56.67%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV--FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV--VDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            + +HE+Q  EL+ KYG+ VP+G A  +V E K+A Q +  +P    LVVK+QI  G RG         GGV IVK  EE+E  +  +LG+IL T Q  P GK+VS++ + +   +  E Y +I LDR  +  +I+   +GG  IE+L+++ P+ I+K  +D   GI      K+    GL P +  +      V KLY+ + + D +LLEINPL  T    +V  DAK+  DDNAAFR K
Sbjct:    1 MKLHEHQSKELLKKYGLPVPEGYAAFNVKEAKEAAQALGGYP----LVVKAQIHCGARGKA-------GGVKIVKSDEELEAFSEAILGKILKTVQC-PNGKVVSRLLIEKATPIEKEFYLSITLDRSNSKILIMASKEGGMEIEELSKEKPDAIIKEYVDPVLGIMPYQTRKLSFALGLNPSLFGKI-----VSKLYQAYMDLDASLLEINPLVLTKDGDIVLLDAKVEIDDNAAFRHK 223          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ORITI3.624e-3435.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRASB3.624e-3437.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICAH4.733e-3437.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LARHH4.733e-3437.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ORITB6.181e-3435.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EHRRG8.073e-3437.24Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_FLAPJ1.377e-3333.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EHRRW2.349e-3336.82Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOBA4.006e-3337.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HYDS04.006e-3339.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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