FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_THISH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.354e-31
Identity = 80/236 (33.90%), Postives = 129/236 (54.66%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N+HE+Q   L  ++GI VP+G+AV+    + +A   +  D    VVK+Q+ AGGRG         GGV +VK   E+E   G++LG  L T QTGP G  ++ V +     +  E+Y ++++DR      I+  + GG  IE +A + P  I+ + +D   G       +V   L  +    +  ++ + +LY+LF +SD +L+EINPL  T   +L+A DAK+N DDN  +R +
Sbjct:    1 MNLHEFQAKALFREHGIPVPEGVAVSDPAALGEAISSLGGD--AWVVKAQVHAGGRGKA-------GGVRLVKGSRELEHAVGELLGGRLATHQTGPAGLPINTVLVESLTDIGRELYLSLLVDRARRRVAIMASAAGGMDIETVAAESPEKIITLHVDPAAGYMPYQGRRVAFALGLEGPQVSALVKLLGQLYRLFVDSDASLVEINPLVVTKTGELIALDAKINLDDNGLYRHQ 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FRATM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.354e-31
Identity = 81/240 (33.75%), Postives = 128/240 (53.33%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L+  YG+ V KG+   + +E  +A   +    K  VVK+Q+ AGGRG         GGV +VK  +E  ++A  ++G+ LVT QT  +G+ V+ V + E +  +  E+Y   ++DR +     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  +    ND ++ +   YK F E D  L EINPLA     ++V  D K+N D NA +R  + L
Sbjct:    1 MNLHEYQAKDLLESYGLKVQKGIVAHNPNEAARAFDQL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSSQEAREVAESLIGKNLVTFQTDAEGQPVNSVGVFEDVYPVTRELYLGAVVDRSSRKVTFMASTEGGVDIEEVAHNSPEKILKVEVDPLVGLQPFQAREVAFKLGLEGKQINDFVKTMLGAYKAFIECDFALFEINPLAVRENGEIVCVDGKINLDSNALYRHPKLL 231          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FRATH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Francisella tularensis subsp. holarctica (strain LVS) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.354e-31
Identity = 81/240 (33.75%), Postives = 128/240 (53.33%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L+  YG+ V KG+   + +E  +A   +    K  VVK+Q+ AGGRG         GGV +VK  +E  ++A  ++G+ LVT QT  +G+ V+ V + E +  +  E+Y   ++DR +     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  +    ND ++ +   YK F E D  L EINPLA     ++V  D K+N D NA +R  + L
Sbjct:    1 MNLHEYQAKDLLESYGLKVQKGIVAHNPNEAAQAFDQL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSSQEAREVAESLIGKNLVTFQTDAEGQPVNSVGIFEDVYPVTRELYLGAVVDRSSRKVTFMASTEGGVDIEEVAHNSPEKILKVEVDPLVGLQPFQAREVAFKLGLEGKQINDFVKTMLGAYKAFIECDFALFEINPLAVRENGEIVCVDGKINLDSNALYRHPKLL 231          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FRATF (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.354e-31
Identity = 81/240 (33.75%), Postives = 128/240 (53.33%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L+  YG+ V KG+   + +E  +A   +    K  VVK+Q+ AGGRG         GGV +VK  +E  ++A  ++G+ LVT QT  +G+ V+ V + E +  +  E+Y   ++DR +     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  +    ND ++ +   YK F E D  L EINPLA     ++V  D K+N D NA +R  + L
Sbjct:    1 MNLHEYQAKDLLESYGLKVQKGIVAHNPNEAAQAFDQL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSSQEAREVAESLIGKNLVTFQTDAEGQPVNSVGIFEDVYPVTRELYLGAVVDRSSRKVTFMASTEGGVDIEEVAHNSPEKILKVEVDPLVGLQPFQAREVAFKLGLEGKQINDFVKTMLGAYKAFIECDFALFEINPLAVRENGEIVCVDGKINLDSNALYRHPKLL 231          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ALISL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Aliivibrio salmonicida (strain LFI1238) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.354e-31
Identity = 88/241 (36.51%), Postives = 131/241 (54.36%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A+YG+ VP+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V++ A K LG+ LVT QT  +G+ V+KV + E  ++ NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I +  ID   G       +    LA K+    D I+Q  K++     +F + D  LLEINPL  T+   L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEYGLPVPEGYACDTAQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKEFAQKWLGKNLVTFQTDAKGQPVTKVLVEEASNIANELYLGAVVDRATRRIVFMASTEGGVDIEKIAEETPELIHQAAIDPLVGPQAFQGRE----LAFKLGLEGDQIKQFVKIFLGLGNMFAQYDLALLEINPLVVTAEGNLLCLDGKINIDSNAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_LEGPL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Legionella pneumophila (strain Lens) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.091e-30
Identity = 85/241 (35.27%), Postives = 128/241 (53.11%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A YG+ VP+G    +V++       +       VVK+Q+ AGGRG         GGV +V  K+E+  +A  MLG  LVT QT  +G+ V+ + + E   +  E+Y   ++DR T   +I+  ++GG  IE +A + P  I KV +D   G+      +     A K+  ++D I+Q   L     K+F + D +LLEINPL  T   QL+  D K+N D NA FRQ +
Sbjct:    1 MNLHEYQAKQLFASYGLPVPRGEVAYNVEDALLVASQL--STSRWVVKAQVHAGGRGKA-------GGVKLVSSKDELAAVAKSMLGTRLVTYQTDARGQPVNAILVEETCEIDKELYLGAVVDRSTRRVVIMASTEGGVEIEKVAHETPEKIFKVVVDPLVGVMPFQCRET----AFKLGLKDDQIKQFTHLMMGLGKMFVDCDLSLLEINPLVITKSGQLICLDGKINIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_LEGPC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Legionella pneumophila (strain Corby) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.091e-30
Identity = 85/241 (35.27%), Postives = 128/241 (53.11%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A YG+ VP+G    +V++       +       VVK+Q+ AGGRG         GGV +V  K+E+  +A  MLG  LVT QT  +G+ V+ + + E   +  E+Y   ++DR T   +I+  ++GG  IE +A + P  I KV +D   G+      +     A K+  ++D I+Q   L     K+F + D +LLEINPL  T   QL+  D K+N D NA FRQ +
Sbjct:    1 MNLHEYQAKQLFASYGLPVPRGEVAYNVEDALLVASQL--STSRWVVKAQVHAGGRGKA-------GGVKLVSSKDELAAVAKSMLGTRLVTYQTDARGQPVNAILVEETCEIDKELYLGAVVDRSTRRVVIMASTEGGVEIEKVAHETPEKIFKVVVDPLVGVMPFQCRET----AFKLGLKDDQIKQFTHLMMGLGKMFVDCDLSLLEINPLVITKSGQLICLDGKINIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FRATW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.091e-30
Identity = 81/240 (33.75%), Postives = 128/240 (53.33%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L+  YG+ V KG+   + +E  +A   +    K  VVK+Q+ AGGRG         GGV +VK  +E  ++A  ++G+ LVT QT  +G+ V+ V + E +  +  E+Y   ++DR +     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  +    ND ++ +   YK F E D  L EINPLA     ++V  D K+N D NA +R  + L
Sbjct:    1 MNLHEYQAKDLLESYGLKVQKGIVAHNPNEAAQAFDQL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSSQEAREVAESLIGKNLVTFQTDAEGQPVNSVGVFEDVYPVTRELYLGAVVDRSSRKVTFMASTEGGVDIEEVAHNSPEKILKVEVDPLVGLQPFQAREVAFKLGLEGKQINDFVKTMLGAYKAFIECDFALFEINPLAVRENGEIVCVDGKINLDSNALYRHPKLL 231          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FRATT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Francisella tularensis subsp. tularensis GN=sucC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.091e-30
Identity = 81/240 (33.75%), Postives = 128/240 (53.33%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L+  YG+ V KG+   + +E  +A   +    K  VVK+Q+ AGGRG         GGV +VK  +E  ++A  ++G+ LVT QT  +G+ V+ V + E +  +  E+Y   ++DR +     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  +    ND ++ +   YK F E D  L EINPLA     ++V  D K+N D NA +R  + L
Sbjct:    1 MNLHEYQAKDLLESYGLKVQKGIVAHNPNEAAQAFDQL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSSQEAREVAESLIGKNLVTFQTDAEGQPVNSVGVFEDVYPVTRELYLGAVVDRSSRKVTFMASTEGGVDIEEVAHNSPEKILKVEVDPLVGLQPFQAREVAFKLGLEGKQINDFVKTMLGAYKAFIECDFALFEINPLAVRENGEIVCVDGKINLDSNALYRHPKLL 231          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FRATO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.091e-30
Identity = 80/240 (33.33%), Postives = 128/240 (53.33%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L+  YG+ V KG+   + +E  +A   +    K  V+K+Q+ AGGRG         GGV +VK  +E  ++A  ++G+ LVT QT  +G+ V+ V + E +  +  E+Y   ++DR +     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  +    ND ++ +   YK F E D  L EINPLA     ++V  D K+N D NA +R  + L
Sbjct:    1 MNLHEYQAKDLLESYGLKVQKGIVAHNPNEAAQAFDQL--GGKFAVIKAQVHAGGRGKA-------GGVKVVKSSQEAREVAESLIGKNLVTFQTDAEGQPVNSVGIFEDVYPVTRELYLGAVVDRSSRKVTFMASTEGGVDIEEVAHNSPEKILKVEVDPLVGLQPFQAREVAFKLGLEGKQINDFVKTMLGAYKAFIECDFALFEINPLAVRENGEIVCVDGKINLDSNALYRHPKLL 231          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_THISH8.354e-3133.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_FRATM8.354e-3133.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_FRATH8.354e-3133.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_FRATF8.354e-3133.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALISL8.354e-3136.51Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEGPL1.091e-3035.27Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEGPC1.091e-3035.27Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_FRATW1.091e-3033.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_FRATT1.091e-3033.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_FRATO1.091e-3033.33Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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