FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBHB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=sucC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.146e-30
Identity = 86/241 (35.68%), Postives = 130/241 (53.94%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ VP+G A  +  E  +A   +  + K  VVK Q+ AGGRG         GGV +   K+ V++ A K LG+ LVT QT   G+ V+K+ + E  ++ NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+    D I+Q  K++     +F + D  LLEINPL  T    L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPVPEGYACDTPQEAFEAAGRITTEKK--VVKCQVHAGGRGKA-------GGVELHDTKDGVKEFAQKWLGKNLVTYQTDANGQPVTKILVEEASNIANELYLGAVVDRATRKIVFMASTEGGVEIEKVAEETPELIHKAAIDPLVGPQAYQGRE----LAFKLGLEGDQIKQFVKIFMGLGTMFSQYDLALLEINPLVITGEGNLLCLDGKINIDSNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PYRCJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=sucC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.146e-30
Identity = 78/236 (33.05%), Postives = 128/236 (54.24%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + +HEY+  EL AKYG+ +P G    + +EV+KA +++ P    +V+K+Q++  GRG         GG+ + K+ EE  +L+ +M G  +       +G  V K+Y+ + L +  EMY ++++DR T   + +    GG  IE++A+  P  I +V +D F G+ D     +V   G +P  A    A   V+ +YK+  + D  L+E NPLA T    +V  DA++  DDNA FR
Sbjct:    1 MKLHEYEAKELFAKYGVKIPPGRLALTPEEVRKAAEEMGPP---VVLKAQVVVAGRGKA-------GGIKVAKRVEEAYELSKQMFGMNI-------KGLTVRKLYVTKYLEVEREMYLSLIIDRATRRFLFLASPVGGMDIEEIAKTTPEKIKRVYVDPFVGLRDYHVRSIVSWLGFSPGTAQWQQAASIVQAMYKIAVDYDAELVESNPLALTKEGDVVPLDARVIVDDNALFR 219          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NEIMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Neisseria meningitidis serogroup A GN=sucC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.146e-30
Identity = 83/235 (35.32%), Postives = 123/235 (52.34%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  EL+A YG+ V  G+   + +E   A   +    K  VVK+Q+ AGGRG         GGV +VK +EE +++A  ++G  LVT QT   G+ V+ V +CE +  V  E+Y   ++DR T     +  ++GG  IE +A + P  I KV +D   G+    A +V   L  K    N+ ++ +   YK F E+D  L E+NPLA      L   D K+  D NA +R
Sbjct:    1 MNLHEYQAKELLASYGLPVQGGILAHNGEEAAAAYDKL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSREEAKEVAESLIGTNLVTYQTDANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRVTFMASTEGGVEIEKVAAETPEKIFKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPLAVRENGALACVDGKIGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NEIMB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Neisseria meningitidis serogroup B GN=sucC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.415e-30
Identity = 83/235 (35.32%), Postives = 123/235 (52.34%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  EL+A YG+ V  G+   + +E   A   +    K  VVK+Q+ AGGRG         GGV +VK +EE +++A  ++G  LVT QT   G+ V+ V +CE +  V  E+Y   ++DR T     +  ++GG  IE +A + P  I KV +D   G+    A +V   L  K    N+ ++ +   YK F E+D  L E+NPLA      L   D K+  D NA +R
Sbjct:    1 MNLHEYQAKELLASYGLPVQGGILAHNGEEAAAAYDKL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSREEAKEVAESLIGTNLVTYQTDANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRITFMASTEGGVEIEKVAAETPEKIFKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPLAVRENGALACVDGKIGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HAMD5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=sucC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.415e-30
Identity = 85/235 (36.17%), Postives = 122/235 (51.91%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  EL A+ G+ VPKG    S  E +KAT ++  D    V K Q+ AGGRG         GGV +    ++V   A + LG+ LVT QT  QG+ V  + +     +  E+Y   ++DR ++  + +  ++GG  IE +AEK P++I KV ID   G       ++   L       +   +    L KLF E D  LLEINPL  T  ++L+  DAKL  D NA +RQ
Sbjct:    1 MNLHEYQAKELFARRGLPVPKGYVCRSAGEAEKATTELGGDL--WVAKCQVHAGGRGKS-------GGVKLCNNPQDVSAFAEQWLGKNLVTYQTDLQGQPVHHILVEAATDIAQELYLGAVIDRSSSRVVFMASTEGGVEIEKVAEKTPHLIHKVTIDPLTGPQPFQGRELAFQLGLTGKKVSQFSQIFMNLAKLFLECDLALLEINPLVITKKEELICLDAKLTVDGNALYRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEAE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas aeruginosa GN=sucC PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.072e-30
Identity = 86/241 (35.68%), Postives = 128/241 (53.11%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG AV + +E  +A   +     E VVK+Q+ AGGRG         GGV +VK KE+ +  A + LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+K  ID   G       +    LA ++  + D I+Q   ++    KLF + D  LLE+NPL       L   DAK+N D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEEAAEACDKI--GGSEWVVKAQVHAGGRGKA-------GGVKLVKSKEDAKAFAQQWLGKNLVTYQTDANGQPVSKILVESCTDIDKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHDTPEKILKATIDPLVGAQPYQGRE----LAFQLGLKGDQIKQFTHIFVGLAKLFQDYDLALLEVNPLVIKKDGNLHCLDAKINIDSNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEA8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas aeruginosa (strain LESB58) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.072e-30
Identity = 86/241 (35.68%), Postives = 128/241 (53.11%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG AV + +E  +A   +     E VVK+Q+ AGGRG         GGV +VK KE+ +  A + LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+K  ID   G       +    LA ++  + D I+Q   ++    KLF + D  LLE+NPL       L   DAK+N D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEEAAEACDKI--GGSEWVVKAQVHAGGRGKA-------GGVKLVKSKEDAKAFAQQWLGKNLVTYQTDANGQPVSKILVESCTDIDKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHDTPEKILKATIDPLVGAQPYQGRE----LAFQLGLKGDQIKQFTHIFVGLAKLFQDYDLALLEVNPLVIKKDGNLHCLDAKINIDSNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PARUW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Protochlamydia amoebophila (strain UWE25) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.072e-30
Identity = 73/236 (30.93%), Postives = 127/236 (53.81%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N HE+Q  +++ KYGI VP     +S  EV++  +      +  ++K Q+ AGGRG         GGV +    +E+ + + +++G+ ++ +QTGP G I  +V +   + +  E Y  I ++R+ A  ++I    GG +IE +A + PN ++ +PI +          ++   +  K     + +  ++ L K F E+D +LLEINPL ET    L+A DAKL+ DDNA F+ +
Sbjct:    1 MNTHEFQAKQILRKYGIPVPDFYIASSSKEVEEIIKQY--QLQSAIIKVQVHAGGRGKA-------GGVKLATNPQEILEFSQELIGKKIINEQTGPSGMISHQVLISPAILIKKEFYLGITINRELASRVLIASPIGGVNIEKIAHEQPNQLLMLPIPLEETFRSYHLIRIASFMGWKGKQIQEGVAIIQSLVKAFKETDASLLEINPLVETKEGHLLALDAKLSIDDNALFKHE 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACTPJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.072e-30
Identity = 86/240 (35.83%), Postives = 126/240 (52.50%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG--LAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  ++ A+Y + V KG+   S+D+   A   +  D      K Q+ AGGRG         GGV +V+ E E+ +   + LGQ LVT QT   G++V+ +YL E   +  E+Y   ++DR +   + +  + GG +IED+A + P +I K  ID   G      A+   G  LA K+    D I+Q   L+    KLF E D  LLE+NPL  T   QL+  DAK+  D NA +R
Sbjct:    1 MNLHEYQAKQIFAQYRLPVSKGIVCHSLDDAVSAIHTLAGD--TWAAKCQVHAGGRGKA-------GGVKLVRSEAEIREFCHQWLGQRLVTFQTDKNGQLVNTIYLEETCLIERELYLGAVIDRSSQKIVFMASNAGGMNIEDVAAQTPELIHKATIDPLTG------AQAFQGRELAFKLGLSGDQIKQFAHLFVQLAKLFIEKDLALLEVNPLVLTKQGQLLCLDAKMVIDSNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEPW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain W619) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 84/245 (34.29%), Postives = 130/245 (53.06%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748
            +N+HEYQG +L A+YG+ V KG AV + ++  +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+ +  A + LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A + P  I+K  ID   G       +    LA ++      ++Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +   F
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEQAAEACDKI--GGSEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAKAFAAQWLGKNLVTYQTDANGQPVSKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHETPEKILKATIDPLVGAQPFQGRE----LAFQLGLEGKQVQQFAKIFVGLAKLFKDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPKLKTF 232          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_VIBHB4.146e-3035.68Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PYRCJ4.146e-3033.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NEIMA4.146e-3035.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NEIMB5.415e-3035.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAMD55.415e-3036.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEAE7.072e-3035.68Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEA87.072e-3035.68Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PARUW7.072e-3030.93Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACTPJ7.072e-3035.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEPW9.236e-3034.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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