FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEPK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain KT2440) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 84/245 (34.29%), Postives = 130/245 (53.06%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748
            +N+HEYQG +L A+YG+ V KG AV + ++  +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+ +  A + LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A + P  I+K  ID   G       +    LA ++      ++Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +   F
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEQAAEACDKI--GGNEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAKAFAAQWLGKNLVTYQTDANGQPVSKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHETPEKILKATIDPLVGAQPFQGRE----LAFQLGLEGKQVQQFAKIFVGLAKLFKDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPKLKTF 232          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEP1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 84/245 (34.29%), Postives = 130/245 (53.06%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748
            +N+HEYQG +L A+YG+ V KG AV + ++  +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+ +  A + LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A + P  I+K  ID   G       +    LA ++      ++Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +   F
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEQAAEACDKI--GGNEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAKAFAAQWLGKNLVTYQTDANGQPVSKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHETPEKILKATIDPLVGAQPFQGRE----LAFQLGLEGKQVQQFAKIFVGLAKLFKDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPKLKTF 232          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEE4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas entomophila (strain L48) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 84/245 (34.29%), Postives = 130/245 (53.06%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748
            +N+HEYQG +L A+YG+ V KG AV + ++  +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+ +  A + LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A + P  I+K  ID   G       +    LA ++      ++Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +   F
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEQAAEACDKI--GGSEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAKAFAAQWLGKNLVTYQTDANGQPVSKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHETPEKILKATIDPLVGAQPFQGRE----LAFQLGLEGKQVQQFAKIFVGLAKLFKDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPKLKTF 232          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PELCD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 84/238 (35.29%), Postives = 124/238 (52.10%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            + +HEYQ  +L  +YGI +P+G    SV+E  +A +         VVK+QI AGGRG    K+G  G   +   ++  ++A ++L   LVT QTG QG  V  + + E + +  EMY ++ LDR      +I    GG  IE  A K P  + ++ ID   G+    A  +   L         A + +  LY+   E D +L+EINPLA T   +L+A DAK++ DD+A FRQK  L
Sbjct:    1 MKLHEYQAKQLFHRYGIPIPEGRLARSVEETGQAARAFAG---RCVVKAQIHAGGRG----KAG--GVARVNSVDQARNIAQRLLQHTLVTAQTGDQGLYVGSLLVEEIVPVAREMYLSLTLDRANGRYCLIASPDGGVDIEQTARKTPERVRRLTIDPLVGLRAFHARDIARFLGLDGPLSAAASKVILSLYRCLLEKDASLVEINPLAVTEEGRLMAMDAKVSIDDSALFRQKEML 229          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NEIMF (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 83/235 (35.32%), Postives = 123/235 (52.34%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  EL+A YG+ V  G+   + +E   A   +    K  VVK+Q+ AGGRG         GGV +VK +EE +++A  ++G  LVT QT   G+ V+ V +CE +  V  E+Y   ++DR T     +  ++GG  IE +A + P  I KV +D   G+    A +V   L  K    N+ ++ +   YK F E+D  L E+NPLA      L   D K+  D NA +R
Sbjct:    1 MNLHEYQAKELLAGYGLPVQGGILAHNGEEAAAAYDKL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSREEAKEVAESLIGTNLVTYQTDANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRITFMASTEGGVEIEKVAAETPEKIFKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPLAVRENGALACVDGKIGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBSL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio splendidus (strain LGP32) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.206e-29
Identity = 86/241 (35.68%), Postives = 130/241 (53.94%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ VP+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V++ A K LG+ LVT QT   G+ V+K+ + E  ++ NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I +  ID   G       +    LA K+    D I+Q  K++    ++F + D  LLEINPL  T    L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPVPEGFACDTAQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKEFAQKWLGKNLVTYQTDANGQPVTKILVEEASNIANELYLGAVVDRATRKIVFMASTEGGVDIEKIAEETPELIHQSAIDPLVGPQAYQGRE----LAFKLGLVGDQIKQFVKIFMGLGQMFSQYDLALLEINPLVITGEGNLLCLDGKINIDSNAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio parahaemolyticus GN=sucC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.206e-29
Identity = 86/241 (35.68%), Postives = 130/241 (53.94%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ VP+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V++ A K LG+ LVT QT   G+ V+K+ + E  ++ NE+Y   ++DR +   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+    D I+Q  K++     +F + D  LLEINPL  T+   L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPVPEGYACDTPQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKEFAQKWLGKNLVTYQTDANGQPVTKILVEEASNIANELYLGAVVDRASRKIVFMASTEGGVEIEKVAEETPELIHKAAIDPLVGPQAYQGRE----LAFKLGLEGDQIKQFVKIFMGLGTMFSQYDLALLEINPLVITAEGNLLCLDGKINIDSNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEA7 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas aeruginosa (strain PA7) GN=sucC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.206e-29
Identity = 86/241 (35.68%), Postives = 128/241 (53.11%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG AV + +E  +A   +     E VVK+Q+ AGGRG         GGV +VK KE+ +  A + LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+K  ID   G       +    LA ++  + D I+Q   ++    KLF + D  LLE+NPL       L   DAK+N D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEEAAEACDKI--GGGEWVVKAQVHAGGRGKA-------GGVKLVKSKEDAKAFAQQWLGKNLVTYQTDANGQPVSKILVESCTDIDKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHDTPEKILKATIDPLVGAQPYQGRE----LAFQLGLKGDQIKQFTHIFVGLAKLFQDYDLALLEVNPLVIKKDGNLHCLDAKINIDSNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NEIM0 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Neisseria meningitidis serogroup C (strain 053442) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.575e-29
Identity = 82/235 (34.89%), Postives = 123/235 (52.34%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  EL+A YG+ V  G+   + +E   A   +    K  VVK+Q+ AGGRG         GGV +VK +EE +++A  ++G  LVT QT   G+ V+ V +CE +  V  E+Y   ++DR T     +  ++GG  IE +A + P  I KV +D   G+    A +V   L  K    N+ ++ +   YK F ++D  L E+NPLA      L   D K+  D NA +R
Sbjct:    1 MNLHEYQAKELLAGYGLPVQGGILARNGEEAAAAYDKL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSREEAKEVAESLIGTNLVTYQTDANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRITFMASTEGGVEIEKVAAETPEKIFKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVDNDFALFEVNPLAVRENGALACVDGKIGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACTP7 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.575e-29
Identity = 86/240 (35.83%), Postives = 125/240 (52.08%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG--LAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  ++ A+Y + V KG+   S+D+   A   +  D      K Q+ AGGRG         GGV +V+ E E+ +   + LGQ LVT QT   G+ V+ +YL E   +  E+Y   ++DR +   + +  + GG +IED+A + P +I K  ID   G      A+   G  LA K+    D I+Q   L+    KLF E D  LLE+NPL  T   QL+  DAK+  D NA +R
Sbjct:    1 MNLHEYQAKQIFAQYRLPVSKGIVCHSLDDAVSAIHTLAGD--TWAAKCQVHAGGRGKA-------GGVKLVRSEAEIREFCNQWLGQRLVTFQTDKNGQPVNTIYLEETCLIERELYLGAVIDRSSQKIVFMASNAGGMNIEDVAAQTPELIHKATIDPLTG------AQAFQGRELAFKLGLSGDQIKQFAHLFVQLAKLFIEKDLALLEVNPLVLTKQGQLLCLDAKMVIDSNALYR 225          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_PSEPK9.236e-3034.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEP19.236e-3034.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEE49.236e-3034.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PELCD9.236e-3035.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NEIMF9.236e-3035.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBSL1.206e-2935.68Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBPA1.206e-2935.68Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEA71.206e-2935.68Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NEIM01.575e-2934.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACTP71.575e-2935.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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