FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACTP2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.575e-29
Identity = 86/240 (35.83%), Postives = 125/240 (52.08%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG--LAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  ++ A+Y + V KG+   S+D+   A   +  D      K Q+ AGGRG         GGV +V+ E E+ +   + LGQ LVT QT   G+ V+ +YL E   +  E+Y   ++DR +   + +  + GG +IED+A + P +I K  ID   G      A+   G  LA K+    D I+Q   L+    KLF E D  LLE+NPL  T   QL+  DAK+  D NA +R
Sbjct:    1 MNLHEYQAKQIFAQYRLPVSKGIVCHSLDDAVSAIHTLAGD--TWAAKCQVHAGGRGKA-------GGVKLVRSEAEIREFCNQWLGQRLVTFQTDKNGQPVNTIYLEETCLIERELYLGAVIDRSSQKIVFMASNAGGMNIEDVAAQTPELIHKATIDPLTG------AQAFQGRELAFKLGLSGDQIKQFAHLFVQLAKLFIEKDLALLEVNPLVLTKQGQLLCLDAKMVIDSNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XYLFT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.058e-29
Identity = 83/236 (35.17%), Postives = 120/236 (50.85%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N HEYQ  +L A+YGI VP G   +S DE   A + +   +   +VK+QI AGGRG         GGV   K  +EV+  A  MLG  + T Q+      V+ V + E   +  E+Y ++++DR T     I  S+GG  IE +A + P  I  + +D   G+       +   L  +    N   + +  LY+LF + D +L+E+NPLA  S   L A D K+N DDNA FR K
Sbjct:    1 MNFHEYQAKQLFAEYGIPVPAGRIASSADEAVTAAKSL--GNGPWMVKAQIHAGGRGKA-------GGVKFCKTTDEVKQAAATMLGTKMATYQSAGVALPVNLVLVTEAGEITKELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGFHLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFRHK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XYLFM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa (strain M12) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.058e-29
Identity = 83/236 (35.17%), Postives = 120/236 (50.85%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N HEYQ  +L A+YGI VP G   +S DE   A + +   +   +VK+QI AGGRG         GGV   K  +EV+  A  MLG  + T Q+      V+ V + E   +  E+Y ++++DR T     I  S+GG  IE +A + P  I  + +D   G+       +   L  +    N   + +  LY+LF + D +L+E+NPLA  S   L A D K+N DDNA FR K
Sbjct:    1 MNFHEYQAKQLFAEYGIPVPAGRIASSADEAVTAAKSL--GNGPWMVKAQIHAGGRGKA-------GGVKFCKTTDEVKQAAATMLGTKMATYQSAGVALPVNLVLVTEAGEITKELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGFHLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFRHK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XYLFA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa GN=sucC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.058e-29
Identity = 83/236 (35.17%), Postives = 120/236 (50.85%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N HEYQ  +L A+YGI VP G   +S DE   A + +   +   +VK+QI AGGRG         GGV   K  +EV+  A  MLG  + T Q+      V+ V + E   +  E+Y ++++DR T     I  S+GG  IE +A + P  I  + +D   G+       +   L  +    N   + +  LY+LF + D +L+E+NPLA  S   L A D K+N DDNA FR K
Sbjct:    1 MNFHEYQAKQLFAEYGIPVPAGRIASSADEAVTAAKSL--GNGPWMVKAQIHAGGRGKA-------GGVKFCKTTDEVKQAAAAMLGTKMATYQSAGVALPVNLVLVTEAGEITKELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGFHLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFRHK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XYLF2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa (strain M23) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.058e-29
Identity = 83/236 (35.17%), Postives = 120/236 (50.85%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N HEYQ  +L A+YGI VP G   +S DE   A + +   +   +VK+QI AGGRG         GGV   K  +EV+  A  MLG  + T Q+      V+ V + E   +  E+Y ++++DR T     I  S+GG  IE +A + P  I  + +D   G+       +   L  +    N   + +  LY+LF + D +L+E+NPLA  S   L A D K+N DDNA FR K
Sbjct:    1 MNFHEYQAKQLFAEYGIPVPAGRIASSADEAVTAAKSL--GNGPWMVKAQIHAGGRGKA-------GGVKFCKTTDEVKQAAATMLGTKMATYQSAGVALPVNLVLVTEAGEITKELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGFHLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFRHK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RUTMC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ruthia magnifica subsp. Calyptogena magnifica GN=sucC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.058e-29
Identity = 78/236 (33.05%), Postives = 126/236 (53.39%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            ++IHEYQ   L     I +PKG+ + +  ++    + +  D    VVK+QI AGGRG G       GGV      E+VE +  ++LG  L+T QT  +G  V ++ +  K ++  E+Y ++++DR+T    ++  +KGG  IE +A K P+ I+K  ID    ++ +D   +   L             +  LY++F + D  L+EINPL  T   +L+A D K++FDDNA +R K
Sbjct:    1 MHIHEYQAKTLFRCRDIQIPKGILIDNTTKINDVCKALGGD--VWVVKAQIHAGGRGKG-------GGVIFCHSIEKVERVCNQLLGSKLITPQTDAKGLPVGQLLIEAKQNIERELYLSLLIDRQTHKITVLSSTKGGMDIEKVASKTPDKIIKFGIDPLGSLSVQDCTFLAKKLGFNTELTKQFNNTLLSLYEIFTQKDVNLIEINPLIITQENKLLALDGKIDFDDNALYRHK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SODGM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sodalis glossinidius (strain morsitans) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.687e-29
Identity = 83/239 (34.73%), Postives = 126/239 (52.72%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  ++ E +++   +       VVK Q+ AGGRG         GGV +VK KEE+   A + LG+ LVT QT   G+ V+++ +     +  E+Y  +++DR T   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      + Q  K++     LF E D  L+EINPL  T    L+  D KL+ D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPTGYACNTLREAEESASKIGAG--PWVVKCQVHAGGRGKS-------GGVKVVKLKEEIRAFAEQWLGKRLVTYQTDALGQPVNQILVEVATDIAKELYLGVVVDRGTRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPQPYQGRE----LAFKLGLSGKQVSQFSKIFMGLATLFLERDLALVEINPLVITGAGDLICLDGKLSADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEPG (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain GB-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.687e-29
Identity = 84/245 (34.29%), Postives = 128/245 (52.24%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748
            +N+HEYQG +L A+YG+ V KG AV + +   +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+ +  A + LG+ LVT QT   G+ V+K+ +     +  E+Y   ++DR +   + +  ++GG  IE +A + P  I+K  ID   G       +    LA ++      + Q  K++    KLF E D  LLE+NPL   +   L   DAK+N D NA +RQ +   F
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEAAAEACDKI--GGSEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAKAFAAQWLGKRLVTYQTDANGQPVTKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHETPEKIIKATIDPLVGAQPFQGRE----LAFQLGLEGKQVAQFAKIFVGLAKLFKEHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPKLKTF 232          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ENT38 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Enterobacter sp. (strain 638) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.687e-29
Identity = 84/239 (35.15%), Postives = 125/239 (52.30%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +VK KEE+   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV ID   G       +    LA K+      ++Q  K++    K+F E D  L+EINPL  T+   L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACNTPREAEEAASKI--GSGPWVVKCQVHAGGRGKA-------GGVKVVKSKEEIRAFAEHWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVAIDPLAGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLAKIFLERDLALIEINPLVITTQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NEIG2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Neisseria gonorrhoeae (strain NCCP11945) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 82/235 (34.89%), Postives = 122/235 (51.91%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  EL+A YG+ V  G+   + +E   A   +    K  VVK+Q+ AGGRG         GGV +VK +E+ +++A  ++G  LVT QT   G+ V+ V +CE +  V  E+Y   ++DR T     +  ++GG  IE +A + P  I KV +D   G+    A +V   L  K    N+  + +   YK F E+D  L E+NPLA      L   D K+  D NA +R
Sbjct:    1 MNLHEYQAKELLASYGLPVQGGILAHNGEEAAAAYDKL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSREKAKEVAESLIGTNLVTYQTDANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRVTFMASTEGGVEIEKVAAETPEKIFKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFAKLMTGAYKAFVENDFALFEVNPLAVRENGALACVDGKIGIDSNALYR 226          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ACTP21.575e-2935.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XYLFT2.058e-2935.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XYLFM2.058e-2935.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XYLFA2.058e-2935.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XYLF22.058e-2935.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RUTMC2.058e-2933.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SODGM2.687e-2934.73Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEPG2.687e-2934.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ENT382.687e-2935.15Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NEIG23.510e-2934.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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